1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggctcacataattgtgagatgtacagtgatgtgctaattattgctgatgtttcttctctcctaccttactaatgcatcattttcttgtccctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCA
species | Oryza sativa |
transcript | LOC_Os04g51580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|88315471|gb|CI613740.1|CI613740
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|29660969|gb|CB657244.1|CB657244
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|88329484|gb|CI648545.1|CI648545
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|88413389|gb|CI581404.1|CI581404
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|117231077|gb|CT860181.1|CT860181
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|58695205|gb|CK083892.1|CK083892
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|33823855|gb|CF337739.1|CF337739
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCATGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|87005049|gb|CI308925.1|CI308925
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|88409788|gb|CI571045.1|CI571045
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGGGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|88760090|gb|CI769646.1|CI769646
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAEST: gi|38472393|gb|CF956524.1|CF956524
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
EST: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAG GTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
genomic: TGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGgtgagagctt ... ctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGA
gatgtttcttctctcctaccttactaatgcatcattttcttgtccctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCA
tactaat putative branch site (score: 21)
tcattttcttgtccct putative PPT
ttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctcacataattgtgagatgtacagtgatgtgctaattattgctgatgtttcttctctcctaccttactaatgcatcattttcttgtccctttgtctagGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - cacataa
- - - - - - - - -gatgtac
- - - - - - - - - - - - - -gatgtgc
- - - - - - - - - - - - - - - - - - - - ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttg