Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgccatatatttttggacttttgatggttttacctggccttctgatcaagttctttttttctgagttctttttaattgattctgattcttccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG

Basic information

species Oryza sativa
transcript LOC_Os04g51270.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51270.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G124103_T01 (Zea mays), 3'ss of exon 1
tgccatatatttttggacttttgatggttttacctggccttctgatcaagttctttttttctgagttctttttaattgattctgattcttccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG
     | | |   |  |  |||    |  ||   |    || |||||     |  ||    |   |   |  |  |  ||| ||  | || |  ||| |||  | |||||||||| ||||| |||||| |||| || ||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| ||||
----gtgtgtcgatttatgtttacacgcctttttt--ttttttgatctgaaacagttgaggtctatctctgattctgaattatggattttgcc-cagGAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG

upper sequence: LOC_Os04g51270.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G124103_T03 (Zea mays), 3'ss of exon 1
tgccatatatttttggacttttgatggttttacctggccttctgatcaagttctttttttctgagttctttttaattgattctgattc------ttccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG--
   |    ||| |  | |  || ||| ||  ||      || |  |    |          |||| ||| | |   ||||||||| |       ||    ||| |||  | |||||||||| ||||| |||||| |||| || ||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| ||||  
-agctggcattgtgtgtcgatttatgtttacacgccttttttttttttgatctgaaacagttgaggtctatct--ctgattctgaattatggattttgcccagGAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGGT

upper sequence: LOC_Os04g51270.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G094928_T02 (Zea mays), 3'ss of exon 1
-tgccatatatt--tttggacttttga--tggttttacctggccttctgatcaagttctttttttctgagttctttttaattgattctgattcttccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG--
 || | | ||    | | |  || ||   |   |||   ||  ||         |   | | | ||||| | |   |||   |   ||  |  ||    ||| |||  |  ||||||||| ||||| ||||| ||||| |||||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| ||||  
atgtcttgtagcgatctaggtttatgtgctccctttgtttgatctgaaacatttgaggtctatctctgattccgaatta--cggaccttttgttttgcccagGAGCTGAGGGATGGACGCGAACAGGCGCCAGAGTGGGATCCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCCGCTAGAGCTGGT

upper sequence: LOC_Os04g51270.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G124103_T02 (Zea mays), 3'ss of exon 1
tgccatatatttttggacttttgatggttttacctggccttctgatcaagttctttttttctgagttctttttaattgattctgattc------ttccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG
   |    ||| |  | |  || ||| ||  ||      || |  |    |          |||| ||| | |   ||||||||| |       ||    ||| |||  | |||||||||| ||||| |||||| |||| || ||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| ||||
-agctggcattgtgtgtcgatttatgtttacacgccttttttttttttgatctgaaacagttgaggtctatct--ctgattctgaattatggattttgcccagGAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG

upper sequence: LOC_Os04g51270.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G094928_T03 (Zea mays), 3'ss of exon 1
-tgccatatatt--tttggacttttga--tggttttacctggccttctgatcaagttctttttttctgagttctttttaattgattctgattcttccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG
 || | | ||    | | |  || ||   |   |||   ||  ||         |   | | | ||||| | |   |||   |   ||  |  ||    ||| |||  |  ||||||||| ||||| ||||| ||||| |||||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| ||||
atgtcttgtagcgatctaggtttatgtgctccctttgtttgatctgaaacatttgaggtctatctctgattccgaatta--cggaccttttgttttgcccagGAGCTGAGGGATGGACGCGAACAGGCGCCAGAGTGGGATCCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCCGCTAGAGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88976560|gb|CI024681.1|CI024681
EST:     CTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|8858728|gb|AU096046.1|AU096046
EST:     GAAATNTCGTCGCTACCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCANCAATTGTTGGC
genomic: GAAATCTCGTCGCT-TCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|88728180|gb|CI751690.1|CI751690
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|33808450|gb|CF330112.1|CF330112
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|88760409|gb|CI769965.1|CI769965
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|33659779|gb|CF282392.1|CF282392
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|700659|gb|D46950.1|D46950
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|88738132|gb|CI761640.1|CI761640
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAATGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|700675|gb|D46966.1|D46966
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|88581807|gb|CI699017.1|CI699017
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|2276040|gb|C25017.1|C25017
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|88361918|gb|CI682092.1|CI682092
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|58587970|gb|CF986278.1|CF986278
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|88721963|gb|CI745473.1|CI745473
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|88736650|gb|CI760158.1|CI760158
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|55408685|gb|CV721061.1|CV721061
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|11863327|gb|AU066028.2|AU066028
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|30226563|gb|CB964455.1|CB964455
EST:     GTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: GTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|55433931|gb|CV730082.1|CV730082
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|38468888|gb|CF953019.1|CF953019
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|88345939|gb|CI632412.1|CI632412
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|88690585|gb|CI734664.1|CI734664
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|87004212|gb|CI296754.1|CI296754
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|27547337|gb|CA767335.2|CA767335
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGGGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|58593666|gb|CF991974.1|CF991974
EST:     ATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGGCGGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGG
genomic: ATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT---C-GCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGG
EST: gi|88765387|gb|CI774481.1|CI774481
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|55438738|gb|CV732667.1|CV732667
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|86503200|gb|CI145833.1|CI145833
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCCATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|23514183|gb|BU673507.1|BU673507
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|58694530|gb|CK083217.1|CK083217
EST:     TCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: TCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|8857393|gb|AU094711.1|AU094711
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|2280867|gb|C25362.1|C25362
EST:     ATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: ATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|163923261|gb|EG711070.1|EG711070
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|88288582|gb|CI663371.1|CI663371
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|568132|gb|D38967.1|D38967
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|163925475|gb|EG715368.1|EG715368
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|14192429|gb|AU184640.1|AU184640
EST:     ATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: ATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|88688869|gb|CI732445.1|CI732445
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|25806235|gb|CA762196.1|CA762196
EST:     AATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCCCGCAGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGG
genomic: AATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCT--CTC-GCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGG
EST: gi|8528073|gb|AU092888.1|AU092888
EST:     AAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: AAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|88360665|gb|CI647675.1|CI647675
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|568319|gb|D39163.1|D39163
EST:     ATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGCAG                       
genomic: ATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCT--C-GCAGgtatggtgaa ... ccttcagc
EST: gi|8858718|gb|AU096036.1|AU096036
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
EST: gi|218502328|gb|FG952293.1|FG952293
EST:     TTCGAGTCTCTCTCTCGCAGCAG                       
genomic: TTCGAGTCT-TCTCTCTC-GCAGgtatggtgaa ... ccttcagc
EST: gi|88689212|gb|CI732788.1|CI732788
EST:     CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAG                         CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC
genomic: CGAAATCTCGTCGCTTCCCCCGGGTTCGATTCGAGTCTTCTCTCTCGCAGgtatggtgaa ... ccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagttctttttttctgagttctttttaattgattctgattcttccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG
                                  ttctgat  putative branch site (score: 3)
                                  ttctgattcttccttc  CT-rich tract
                    ttctttttaattgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgccatatatttttggacttttgatggttttacctggccttctgatcaagttctttttttctgagttctttttaattgattctgattcttccttcagcagCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
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tgccata
- - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - tacctgg
- - - - - - - - - - - - - - - - - - -ccttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattc