1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagccttcgctctcgccttcgctctctcttcgttcttgctgccgtggtggtggactaatgtgggtggtggcgtcatgcggttgcagGGTCGGGGAGGAGGCGCAGCAGCACATGATGGGCGCGAGGTGGGCGGCGGCGGTGGCCAGGCCGCCGCCCTTCACGGCGGCGCAGTACGAGGAGCTGGAG
species | Oryza sativa |
transcript | LOC_Os04g51190.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCGGCCCTCCTTCATCTTCCCCTTCTGCCGCTCCTCCCCTCTCTCCGC GGTCGGGGAGGAGGCGCAGCAGCACATGATGGGCGCGAGGTGGGCGGCGGCEST: gi|58678258|gb|CK066945.1|CK066945
genomic: CACCGGCCCTCCTTCATCTTCCCCTTCTGCCGCTCCTCCCCTCTCTCCGCgtaagccttc ... gcggttgcagGGTCGGGGAGGAGGCGCAGCAGCACATGATGGGCGCGAGGTGGGCGGCGGC
EST: ACCGGCCCTCCTTCATCTTCCCCTTCTAGCCGCTCCTCCCCTCTCTCCGC GGTCGGGGAGGAGGCGCAGCAGCACATGATGGGCGCGAGGTGGGCGGCGGC
genomic: ACCGGCCCTCCTTCATCTTCCCCTTCT-GCCGCTCCTCCCCTCTCTCCGCgtaagccttc ... gcggttgcagGGTCGGGGAGGAGGCGCAGCAGCACATGATGGGCGCGAGGTGGGCGGCGGC
gttcttgctgccgtggtggtggactaatgtgggtggtggcgtcatgcggttgcagGGTCGGGGAGGAGGCGCAGCAGCACATGATGGGCGCGAGGTGGGCGGCGGCGGTGGCCAGGCCGCCGCCCTTCACGGCGGCGCAGTACGAGGAGCTGGAG
gactaat putative branch site (score: 22)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttcgctctcgccttcgctctctcttcgttcttgctgccgtggtggtggactaatgtgggtggtggcgtcatgcggttgcagGGTCGGGGAGGAGGCGCAGCAGCACATGATGGGCGCGAGGTGGGCGGCGGCGGTGGCCAGGCCGCCGCCCTTCACGGCGGCGCAGTACGAGGAGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA