1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgggtcggcggccggcggcgcgggttgttcttggtttggattttgtccccgattgctgatctgctgattcttgctccctgggttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCCGCCGCACCCGTCCGCGATCGCCAAGAAGCCGATGCTAGA
species | Oryza sativa |
transcript | LOC_Os04g47580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGAACCGGAGGCTGGCGGGGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGAAATCAACAACCTCGTCGGGGCGCEST: gi|88722849|gb|CI746359.1|CI746359
genomic: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
EST: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCEST: gi|58658155|gb|CK046835.1|CK046835
genomic: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
EST: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCEST: gi|88721535|gb|CI744834.1|CI744834
genomic: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
EST: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTNGGGGCGCEST: gi|86831971|gb|CI305197.1|CI305197
genomic: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
EST: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCEST: gi|88406938|gb|CI578466.1|CI578466
genomic: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
EST: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCEST: gi|58672181|gb|CK060867.1|CK060867
genomic: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
EST: GAGAACCGGAGTGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCEST: gi|88695221|gb|CI739259.1|CI739259
genomic: GAGAACCGGAG-GCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
EST: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGCTCGGGGCGEST: gi|88694046|gb|CI738084.1|CI738084
genomic: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCG-TCGGGGCG
EST: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAG AGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
genomic: CGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGgtgggtcggc ... gttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGC
tggattttgtccccgattgctgatctgctgattcttgctccctgggttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCCGCCGCACCCGTCCGCGATCGCCAAGAAGCCGATGCTAGA
tgctgat putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtcggcggccggcggcgcgggttgttcttggtttggattttgtccccgattgctgatctgctgattcttgctccctgggttggtgcagAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCCGCCGCACCCGTCCGCGATCGCCAAGAAGCCGATGCTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC