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...cccctttactgaatgaacatttcgatgccatgctgaacccaatgatttttcagtttcacacacggagaaatttgtcaacatttttgcacaatatttgcagGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCACCATGCCTTTCTCTTACGGCATCAGTTCTGCATTCGTTTCTTGAAGAGC
species | Oryza sativa |
transcript | LOC_Os04g47380.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGG GTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCAEST: gi|88717546|gb|CI741056.1|CI741056
genomic: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGGgttcgtcttc ... atatttgcagGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCA
EST: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGG GTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCAEST: gi|58687515|gb|CK076202.1|CK076202
genomic: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGGgttcgtcttc ... atatttgcagGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCA
EST: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGG GTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCAEST: gi|88431660|gb|CI576851.1|CI576851
genomic: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGGgttcgtcttc ... atatttgcagGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCA
EST: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGG GTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCAEST: gi|88392758|gb|CI623989.1|CI623989
genomic: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGGgttcgtcttc ... atatttgcagGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCA
EST: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGG GTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCA
genomic: CGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGGgttcgtcttc ... atatttgcagGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCA
tttttcagtttcacacacggagaaatttgtcaacatttttgcacaatatttgcagGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCACCATGCCTTTCTCTTACGGCATCAGTTCTGCATTCGTTTCTTGAAGAGC
aacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccctttactgaatgaacatttcgatgccatgctgaacccaatgatttttcagtttcacacacggagaaatttgtcaacatttttgcacaatatttgcagGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCACCATGCCTTTCTCTTACGGCATCAGTTCTGCATTCGTTTCTTGAAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - ctgaatg
- - - - - - - - - - - cgatgcc
- - - - - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca