1 5' 3' | 2 5' 3' | 3 5' 3' |
...tattgatagaccttatcagctcttcagttgattaattttatgcaatctggttttacatattttatataaaaaaacacacactgttttctgttgcatgcagGGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACTTGCATTGTCCCCCATCTCAGGACTTCCTCCATCTGGAATGTTTGTTAAT
species | Oryza sativa |
transcript | LOC_Os04g46480.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCCGCCCACCGACCAGGAAGTCCGCGCCGCCGTTGCTAGCATCCAAGA GGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACTEST: gi|29676794|gb|CB673069.1|CB673069
genomic: GCCCCGCCCACCGACCAGGAAGTCCGCGCCGCCGTTGCTAGCATCCAAGAgtaagattct ... ttgcatgcagGGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACT
EST: GCCCCGCCCACCGACCAGGAAGTCCGCGCCGCCGTTGCTAGCATCCAAGA GGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACTEST: gi|2428225|gb|C72688.1|C72688
genomic: GCCCCGCCCACCGACCAGGAAGTCCGCGCCGCCGTTGCTAGCATCCAAGAgtaagattct ... ttgcatgcagGGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACT
EST: GCCCCGCCCACCGACCAGGAAGTCCGCGCCGCCGTTGCTAGCATCCAAGA GGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACT
genomic: GCCCCGCCCACCGACCAGGAAGTCCGCGCCGCCGTTGCTAGCATCCAAGAgtaagattct ... ttgcatgcagGGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACT
tctggttttacatattttatataaaaaaacacacactgttttctgttgcatgcagGGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACTTGCATTGTCCCCCATCTCAGGACTTCCTCCATCTGGAATGTTTGTTAAT
ttttctgtt CT-rich tract
ttttacatattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgatagaccttatcagctcttcagttgattaattttatgcaatctggttttacatattttatataaaaaaacacacactgttttctgttgcatgcagGGTATTTGAAAACCATCCTGGATTGGATTCTGATGCACCTGCCCAAGCACTTGCATTGTCCCCCATCTCAGGACTTCCTCCATCTGGAATGTTTGTTAAT
- - - - - - - - - - - - - gttgatt
- - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa