1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttaaactagaaaaatactatggatactttaattcctcttcatccgtatatgattaacatcatgaataaagtaaaaagaaataagttcaaccttgtgcagTTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG
species | Oryza sativa |
transcript | LOC_Os04g45040.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAG TTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTAEST: gi|33675238|gb|CF303477.1|CF303477
genomic: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAGgtgagggaga ... ccttgtgcagTTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTA
EST: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAG TTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTAEST: gi|33676885|gb|CF305124.1|CF305124
genomic: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAGgtgagggaga ... ccttgtgcagTTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTA
EST: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAG TTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTAEST: gi|58653489|gb|CK042169.1|CK042169
genomic: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAGgtgagggaga ... ccttgtgcagTTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTA
EST: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATGCGAG TTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTAEST: gi|58673974|gb|CK062660.1|CK062660
genomic: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAGgtgagggaga ... ccttgtgcagTTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTA
EST: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAG TTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTA
genomic: GGCGCCAGCGAGCAGAAGGCGCCGCCTGTCGCGGACGGCATAGATTCGAGgtgagggaga ... ccttgtgcagTTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTA
gtatatgattaacatcatgaataaagtaaaaagaaataagttcaaccttgtgcagTTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG
gattaac putative branch site (score: 2)
atgaataaagtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaactagaaaaatactatggatactttaattcctcttcatccgtatatgattaacatcatgaataaagtaaaaagaaataagttcaaccttgtgcagTTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA