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...ttgtttttccttctgaagatgaccttgattaatctggaataatgtttcatttcctatctttgttgtgatctgtacatgtggaattttgctccatctgcagAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGT
species | Oryza sativa |
transcript | LOC_Os04g41910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAG AACATTTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAEST: gi|29636733|gb|CB641742.1|CB641742
genomic: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGgtatcctcct ... ccatctgcagAACATTTT-GCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAA
EST: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAG AACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGEST: gi|88347690|gb|CI655043.1|CI655043
genomic: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGgtatcctcct ... ccatctgcagAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAG
EST: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAG AACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGEST: gi|86903824|gb|CI302470.1|CI302470
genomic: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGgtatcctcct ... ccatctgcagAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAG
EST: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAG AACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGEST: gi|29676260|gb|CB672535.1|CB672535
genomic: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGgtatcctcct ... ccatctgcagAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAG
EST: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAG AACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAG
genomic: CGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGgtatcctcct ... ccatctgcagAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAG
ttcatttcctatctttgttgtgatctgtacatgtggaattttgctccatctgcagAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGT
ttttgctcc CT-rich tract
aatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttttccttctgaagatgaccttgattaatctggaataatgtttcatttcctatctttgttgtgatctgtacatgtggaattttgctccatctgcagAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG