1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tagaggccgaaatatatgtcgcgtgtgacgtgtgttggttcgttctagtgctctctctctgttgccaaatttagtaaaattttgatgcttgctttgttagGGGGCAGGCAGAGAGGGAGTTCAAGGTTGAGGTGGAAGCGATTGGGCGGGTGCGGCACAAGAACCTGGTTCGGCTGCTGGGATACTGCGCCGAGGGTAAC
species | Oryza sativa |
transcript | LOC_Os04g35080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tagtgctctctctctgttgccaaatttagtaaaattttgatgcttgctttgttagGGGGCAGGCAGAGAGGGAGTTCAAGGTTGAGGTGGAAGCGATTGGGCGGGTGCGGCACAAGAACCTGGTTCGGCTGCTGGGATACTGCGCCGAGGGTAAC
ttttgat putative branch site (score: 4)
cttgcttt CT-rich tract
aaatttagtaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaggccgaaatatatgtcgcgtgtgacgtgtgttggttcgttctagtgctctctctctgttgccaaatttagtaaaattttgatgcttgctttgttagGGGGCAGGCAGAGAGGGAGTTCAAGGTTGAGGTGGAAGCGATTGGGCGGGTGCGGCACAAGAACCTGGTTCGGCTGCTGGGATACTGCGCCGAGGGTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - gcgtgtg
- - - - - - - - - - - - - - - tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct