1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aagagtcttagagatgggttcatgcttcgttgctgtgaaacttaattgtttcatatttagcgattgtgttatttctaaaccatcaattgttaaattgtagGGAGTGCCGGCGATGTGCTCGAAGACAATCCTGTGGGGAGGTTGAAGGTCTTCATCTATGACCTCCCAAGAAAGTACAACAAGAAGATGGTCAACAAGGA
species | Oryza sativa |
transcript | LOC_Os04g32670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCGGGGCCGTTGAGCGCGCGGCAGAGCAGCACAGCGAGCGCATCTCAG GGAGTGCCGGCGATGTGCTCGAAGACAATCCTGTGGGGAGGTTGAAGGTCTEST: gi|25797157|gb|CA753118.1|CA753118
genomic: TTCCGGGGAGGCGGAGCGCGCGGCAGAGCAGCACAGCGAGCGCATCTCAGgttatctctc ... taaattgtagGGAGTGCCGGCGATGTGCTCGAAGACAATCCTGTGGGGAGGTTGAAGGTCT
EST: GGGGAGGCGGAGCGCACGGCGGAGCAGCACAGCGAGCGCATCTCAG GGAGTGCCGGCGATGTGCTCGAAGACAATCCTGTGGGGAGGTTGAAGGTCT
genomic: GGGGAGGCGGAGCGCGCGGCAGAGCAGCACAGCGAGCGCATCTCAGgttatctctc ... taaattgtagGGAGTGCCGGCGATGTGCTCGAAGACAATCCTGTGGGGAGGTTGAAGGTCT
ttgtttcatatttagcgattgtgttatttctaaaccatcaattgttaaattgtagGGAGTGCCGGCGATGTGCTCGAAGACAATCCTGTGGGGAGGTTGAAGGTCTTCATCTATGACCTCCCAAGAAAGTACAACAAGAAGATGGTCAACAAGGA
ttctaaa putative branch site (score: 7)
atcaattgttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagagtcttagagatgggttcatgcttcgttgctgtgaaacttaattgtttcatatttagcgattgtgttatttctaaaccatcaattgttaaattgtagGGAGTGCCGGCGATGTGCTCGAAGACAATCCTGTGGGGAGGTTGAAGGTCTTCATCTATGACCTCCCAAGAAAGTACAACAAGAAGATGGTCAACAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - ttcatgc
- - - - - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccat