1 5' 3' |
...gaattagtcacggattaattagcaagttgcagtattattattattattatgggattaattagtgggaattaattagcttagtgtgttttggtgggtgcagGGAGGAGGCGGCACTACAGAGGTGTTCGACAGCGGCCATGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGAAGAAGGCGGCGAGGGTGTGGCTGGGGAC
species | Oryza sativa |
transcript | LOC_Os04g32620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
attatgggattaattagtgggaattaattagcttagtgtgttttggtgggtgcagGGAGGAGGCGGCACTACAGAGGTGTTCGACAGCGGCCATGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGAAGAAGGCGGCGAGGGTGTGGCTGGGGAC
aattaat putative branch site (score: 1)
aattaattagctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattagtcacggattaattagcaagttgcagtattattattattattatgggattaattagtgggaattaattagcttagtgtgttttggtgggtgcagGGAGGAGGCGGCACTACAGAGGTGTTCGACAGCGGCCATGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGAAGAAGGCGGCGAGGGTGTGGCTGGGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - -gttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt