1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cagcaatgtatttaattctgcatgtttatggcatctattactttgtgttcgttagcttcttttttttttgtcttactctgtattctgatttgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAACTTTCAG
species | Oryza sativa |
transcript | LOC_Os04g32330.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCG ACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAAEST: gi|88356597|gb|CI626212.1|CI626212
genomic: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCGgtgagcctcc ... tgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAA
EST: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCG ACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAAEST: gi|218481751|gb|FG959381.1|FG959381
genomic: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCGgtgagcctcc ... tgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAA
EST: GGCGAATGG-GT-CCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCG ACTCTAGGCCTCATCAGGAGTTA-TCACATGCCAGGAACTACAGCAGTCAAEST: gi|58659078|gb|CK047758.1|CK047758
genomic: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCGgtgagcctcc ... tgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAA
EST: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCG ACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAAEST: gi|58659774|gb|CK048454.1|CK048454
genomic: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCGgtgagcctcc ... tgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAA
EST: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCG ACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAAEST: gi|58689671|gb|CK078358.1|CK078358
genomic: GGCGAATGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCGgtgagcctcc ... tgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAA
EST: GCGAAGTGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCG ACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAA
genomic: GCGAA-TGGCGTCCCGCATCGCCTCTCGCCTCCTCCGCCGCTCCAACGCGgtgagcctcc ... tgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAA
tgttcgttagcttcttttttttttgtcttactctgtattctgatttgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAACTTTCAG
ttttttttttgtctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcaatgtatttaattctgcatgtttatggcatctattactttgtgttcgttagcttcttttttttttgtcttactctgtattctgatttgacttgcagACTCTAGGCCTCATCAGGAGTTATTCACATGCCAGGAACTACAGCAGTCAACTTTCAG
- - - - - - - - - tgcatgt
- - - - - - - - - - - - - - tggcatc
- - - - - - - - - - - - - - - - - - - - - ttgtgtt