1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtactactatctctgatccggtcccgatccagatcggaattcttccgaccccctaccctaatcgcacgcgatttcttgatttcttcctctctgatcccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG
species | Oryza sativa |
transcript | LOC_Os04g05080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTC GAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCEST: gi|313079217|gb|HO663798.1|HO663798
genomic: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCgtaagtacta ... cccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTC
EST: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTC GAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCEST: gi|112786061|gb|EE591978.1|EE591978
genomic: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCgtaagtacta ... cccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTC
EST: GATCGATCCCATCCTGCCCAAGCCGCCTCCGATTTCACCTCACCTTGGTC GAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCEST: gi|33659484|gb|CF282097.1|CF282097
genomic: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCgtaagtacta ... cccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTC
EST: ATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTC GAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTNTGCGCTCEST: gi|33659483|gb|CF282096.1|CF282096
genomic: ATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCgtaagtacta ... cccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTC
EST: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTC GAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCEST: gi|33809423|gb|CF330591.1|CF330591
genomic: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCgtaagtacta ... cccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTC
EST: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTC GAGGTCGCCATGGCGGGGAGGCCCAGCATTCTGACCAACAGCTCTGCGCTCEST: gi|55437989|gb|CV732288.1|CV732288
genomic: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCgtaagtacta ... cccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTC
EST: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTC GAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTC
genomic: GATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCgtaagtacta ... cccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTC
ccctaccctaatcgcacgcgatttcttgatttcttcctctctgatcccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG
tttcttgatttcttcc CT-rich tract
atttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactactatctctgatccggtcccgatccagatcggaattcttccgaccccctaccctaatcgcacgcgatttcttgatttcttcctctctgatcccaagctagGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC