1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgctatgcacagtgactcttctgccttcgtggctgtagctccagcagtgaccgcatcacttcatagtcaatttttttttgtttcgcctcctcctttgtagGTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCTCTGGTTTGCTGAACCCGTTCGTTGCACATCTCAAGGTTGCCCAACAACAGATT
species | Oryza sativa |
transcript | LOC_Os03g64320.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGACGCGGCTTGATTCAGCGGTGTTCCAGCTCACCCCCACCCGCACAAG GTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCTCTGGEST: gi|88300757|gb|CI589749.1|CI589749
genomic: GAGACGCGGCTTGATTCAGCGGTGTTCCAGCTCACCCCCACCCGCACAAGgtgagcagtc ... tcctttgtagGTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCTCTGG
EST: GAGACGCGGCTTGATTCAGCGGTGTTCCAGCTCACCCCCACCCGCACAAG GTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCTCTGGEST: gi|88727814|gb|CI749326.1|CI749326
genomic: GAGACGCGGCTTGATTCAGCGGTGTTCCAGCTCACCCCCACCCGCACAAGgtgagcagtc ... tcctttgtagGTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCTCTGG
EST: GAGACGCGGCTTGATTCAGCGGTGTTCCAGCTCACCCCCACCCGCACAAG GTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCCTCTGEST: gi|88393184|gb|CI616668.1|CI616668
genomic: GAGACGCGGCTTGATTCAGCGGTGTTCCAGCTCACCCCCACCCGCACAAGgtgagcagtc ... tcctttgtagGTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCC-TCTG
EST: GAGACGCGGCTTGATTCAGCGGTGTTCCAGCTCACCCCCACCCGCACAAG GTGTGATTTAGTTGTGATAGCAA-TGGAGGGAAGGAGAAGATAGCCTCTGG
genomic: GAGACGCGGCTTGATTCAGCGGTGTTCCAGCTCACCCCCACCCGCACAAGgtgagcagtc ... tcctttgtagGTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCTCTGG
agtgaccgcatcacttcatagtcaatttttttttgtttcgcctcctcctttgtagGTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCTCTGGTTTGCTGAACCCGTTCGTTGCACATCTCAAGGTTGCCCAACAACAGATT
tcaatttttttttgtt CT-rich tract
atagtcaatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctatgcacagtgactcttctgccttcgtggctgtagctccagcagtgaccgcatcacttcatagtcaatttttttttgtttcgcctcctcctttgtagGTGTGATTTAGTTGTGATAGCAAATGGACGGAAGGAGAAGATAGCCTCTGGTTTGCTGAACCCGTTCGTTGCACATCTCAAGGTTGCCCAACAACAGATT
- ctatgca
- - - - - - - - - ttctgcc
- - - - - - - - - - - - - - gtggctg
- - - - - - - - - - - - - - - - - - - ctccagc
- - - - - - - - - - - - - - - - - - - - - - - - - ccgcatc