Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88557522|gb|CI487937.1|CI487937EST: NCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAGAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88661678|gb|CI458188.1|CI458188EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88992227|gb|CI035365.1|CI035365EST: CATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCGATGTTAT
genomic: CATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88974591|gb|CI022132.1|CI022132EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|86508177|gb|CI150810.1|CI150810EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|87025835|gb|CI282412.1|CI282412EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGAGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88295904|gb|CI535067.1|CI535067EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88211020|gb|CI212453.1|CI212453EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88981247|gb|CI026955.1|CI026955EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88530437|gb|CI458832.1|CI458832EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88478158|gb|CI415429.1|CI415429EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88513905|gb|CI441411.1|CI441411EST: GCAGCTGTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88461454|gb|CI526962.1|CI526962EST: GCAGCTCTACATCGAGGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGGTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88661689|gb|CI458325.1|CI458325EST: NCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|86531224|gb|CI171430.1|CI171430EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
EST:
gi|88321490|gb|CI535442.1|CI535442EST: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTG ATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
genomic: GCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTAT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
67 (upstream exon),
74 (downstream exon)
Score:
73GAGGCGCTCCGCCAGGGGCTCAAGGAGTACTCCAGCTGGCCCACCTTCCCGCAGCTCTACATCGACGGCGAGTTCTTCGGAGGATGCGACATCACCGTTGgtacgcaccc ... tattttgcagATGCATACAAAAGTGGAGAGCTGCAGGAAACACTAGAGAAAGCAATGTTATCTTAGTATAAACGTCGAAACACACCATAGAGTACATATAAATGGTATAT
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