1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcagattatttgtggcgtttgctttggaagtatgggtgagtgctcatgtgtttgtgctattgtaggctaatacgctgcgattgtatctcacttgcataagGAACACTCTGGAGGCTGCCATGTGCCTGCAG
species | Oryza sativa |
transcript | LOC_Os03g63090.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCCGACCCCCGGCGGGCGCCACCGCCGCCGCCGCGCCTACCATG GAACACTCTGGAGGCTGCCATGTGCCTGCAG
genomic: CTCTCCGACCCCCGGCGGGCGCCGCCGCCGCCGCCGCGCCTACCATGgtaacctcct ... cttgcataagGAACACTCTGGAGGCTGCCATGTGCCTGCAG
atgtgtttgtgctattgtaggctaatacgctgcgattgtatctcacttgcataagGAACACTCTGGAGGCTGCCATGTGCCTGCAG
atctcac putative branch site (score: 3)
tctcactt CT-rich tract
tattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagattatttgtggcgtttgctttggaagtatgggtgagtgctcatgtgtttgtgctattgtaggctaatacgctgcgattgtatctcacttgcataagGAACACTCTGGAGGCTGCCATGTGCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - tgtggcg
- - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - tgagtgc
- - - - - - - - - - - - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgctgc