1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cgtgtatatctgctgaatcttttggttcacacttctctcacctggagctgttaaatatttagcttttcacttactctggtatcattgtttcttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATA
species | Oryza sativa |
transcript | LOC_Os03g63020.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|58675001|gb|CK063688.1|CK063688
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCACTTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|33381171|gb|CF196514.1|CF196514
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: TTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
genomic: TTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
agctgttaaatatttagcttttcacttactctggtatcattgtttcttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATA
cacttac putative branch site (score: 2)
tcattgtttcttttc putative PPT
ttaaatatttagcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgtatatctgctgaatcttttggttcacacttctctcacctggagctgttaaatatttagcttttcacttactctggtatcattgtttcttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT