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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcctattgcgttggtgtgaatcaaaatctaggttctctcatttgagataatttcgtgctgtgattctgttaactaatcggctaattcattcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAGTATCCTTTGACTTATGGAACACTTCATCTTTCTCCTTTTAAAATAT

Basic information

species Oryza sativa
transcript LOC_Os03g62640.5
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681220|gb|CB677495.1|CB677495
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88692989|gb|CI736564.1|CI736564
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88454050|gb|CI691097.1|CI691097
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATCCGCTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88386151|gb|CI570786.1|CI570786
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88695522|gb|CI737560.1|CI737560
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88724607|gb|CI747866.1|CI747866
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88692917|gb|CI736492.1|CI736492
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCACTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88735255|gb|CI758763.1|CI758763
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTG
EST: gi|88745532|gb|CI768892.1|CI768892
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88591376|gb|CI707406.1|CI707406
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
EST: gi|88717451|gb|CI740961.1|CI740961
EST:     GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCACCTCACG                         AAAATGGATCTCGGGCCTTGCCCNCAAAGTTCATTCGCCGCACCCTACGGA
genomic: GCCGCCTCTTCCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCC-CAAAGTTCATTCGCTGCAGC-TACGGA
EST: gi|88730423|gb|CI754036.1|CI754036
EST:     CCGCCTCTTCCTCGCCGGCCTCTGCCCCCNA-GACCTCTTCCAGCTCACG                         AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG
genomic: CCGCCTCTTCCTCGCCGGCCTCTGCCCCC-ACGACCTCTTCCAGCTCACGgtaccttccc ... ttcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagataatttcgtgctgtgattctgttaactaatcggctaattcattcatggcagAAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAGTATCCTTTGACTTATGGAACACTTCATCTTTCTCCTTTTAAAATAT
                                         ttcattc  CT-rich tract
                         ttaactaat  TA-rich tract