1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agttataaattgatgaagcaacttttacaagaaaaatttcctactatgccatagaaggttcatctcgatcttgacacatttttatggaatgtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTCTGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCT
species | Oryza sativa |
transcript | LOC_Os03g62500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCGGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|58655908|gb|CK044588.1|CK044588
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|29633183|gb|CB638192.1|CB638192
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|58683314|gb|CK072001.1|CK072001
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|29633212|gb|CB638221.1|CB638221
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|58600090|gb|CK010618.1|CK010618
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|29633151|gb|CB638160.1|CB638160
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|29633239|gb|CB638248.1|CB638248
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|58608773|gb|CK036806.1|CK036806
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|58680835|gb|CK069522.1|CK069522
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAA-TTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|29633152|gb|CB638161.1|CB638161
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|88731129|gb|CI754742.1|CI754742
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|58663686|gb|CK052372.1|CK052372
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|29633190|gb|CB638199.1|CB638199
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCEST: gi|88694028|gb|CI738066.1|CI738066
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
EST: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAG CTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
genomic: CTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGgtactgtggc ... gtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATC
atgccatagaaggttcatctcgatcttgacacatttttatggaatgtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTCTGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCT
tcttgac putative branch site (score: 39)
acatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttataaattgatgaagcaacttttacaagaaaaatttcctactatgccatagaaggttcatctcgatcttgacacatttttatggaatgtgtatgcagCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTCTGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - tgatgaa
- - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - -ctatgcc