1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgcgcgcggcgctactgatttccggtgtctcgctctgcttggttgcctacttgctgctgatttttttgttcctctctctgtgtgtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACGACGTCGGCCTCACCCCCGACGGCGAGCCCTTCGTCGCCTGCAACGAGT
species | Oryza sativa |
transcript | LOC_Os03g62090.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88342915|gb|CI640248.1|CI640248
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|58674902|gb|CK063589.1|CK063589
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88441317|gb|CI602088.1|CI602088
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGAGGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88764588|gb|CI773706.1|CI773706
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCACGACGGGGAGCCCGGG CCGAAGCCGGTGAAACATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88327372|gb|CI645156.1|CI645156
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88727099|gb|CI750754.1|CI750754
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGACCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88317121|gb|CI626764.1|CI626764
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGAAGGGGAGCCCGGG CCGAACCCGGTGAAGCATACGAATGGGEST: gi|88314833|gb|CI608292.1|CI608292
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGG
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTEST: gi|88334773|gb|CI647155.1|CI647155
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGT
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88413432|gb|CI581447.1|CI581447
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88390753|gb|CI610979.1|CI610979
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACEST: gi|88351793|gb|CI624598.1|CI624598
genomic: CCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
EST: AACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGG CCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
genomic: AACGAGCTCGTCGTCATCCGCCGCGACGGGGAGCCCGGGgtacgcgcgc ... gtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGAC
ttggttgcctacttgctgctgatttttttgttcctctctctgtgtgtttgtgcagCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACGACGTCGGCCTCACCCCCGACGGCGAGCCCTTCGTCGCCTGCAACGAGT
tgctgat putative branch site (score: 1)
tttttttgttcctctc CT-rich tract
atttttttgtt TA-rich tract