1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctccagcctaaaattctttaatataatcacttcttgttgggaggagctgaaacaatcatttccaagcagtcaaatgaattattttcttcatttttaacagTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG
species | Oryza sativa |
transcript | LOC_Os03g61810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGG TTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCEST: gi|88338152|gb|CI677144.1|CI677144
genomic: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGGgtacgctatg ... tttttaacagTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTC
EST: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGG TTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCEST: gi|88733312|gb|CI756489.1|CI756489
genomic: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGGgtacgctatg ... tttttaacagTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTC
EST: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGG TTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCEST: gi|88587458|gb|CI705204.1|CI705204
genomic: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGGgtacgctatg ... tttttaacagTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTC
EST: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGG TTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCEST: gi|88588249|gb|CI706054.1|CI706054
genomic: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGGgtacgctatg ... tttttaacagTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTC
EST: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGG TTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTC
genomic: AATCTCGCGCTCCGCTCCTGCTCCTGCTCCTGCCATGGAGGAGGCTCAGGgtacgctatg ... tttttaacagTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTC
gctgaaacaatcatttccaagcagtcaaatgaattattttcttcatttttaacagTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG
ttattttcttcatttt CT-rich tract
tcaaatgaattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccagcctaaaattctttaatataatcacttcttgttgggaggagctgaaacaatcatttccaagcagtcaaatgaattattttcttcatttttaacagTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG
ctccagc
- - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - ggagctg
- - - - - - - - - - - - - - - - - - - - - - - - - -acaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatgaa