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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcccgccaaaccctagctccctcggtctgtgactgccccctctcgcttatcatctgccccgatcggcaattcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTAT

Basic information

species Oryza sativa
transcript LOC_Os03g58700.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g58700.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G825524_T02 (Zea mays), 3'ss of exon 1
gtaaggccc---gccaaaccctagctccctcggtctgtgactgccccctctcgcttatcatctgccccgatcg-gcaattcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTAT
||||| ||    ||  ||| ||| | ||  |   |     || |  |||    ||       ||  || |||| || ||| | | ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| || || || |
gtaagtcctcctgcggaactctacccccacctccccaccgcttcttccttc--ctcggtccgtgttccaatcgtgcgatttgggtgcagGATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTCTCCGAACTGCGCACCTCGCGACTATCGCCGCACAAGTACTACGAGCTGT

upper sequence: LOC_Os03g58700.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G844195_T02 (Zea mays), 3'ss of exon 1
gtaaggccc--gccaaaccctagctccctcggtctgt-gactgcc----ccctctcgcttatcatctgccccgatcg-gcaattcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTAT
||||| |||  ||  |||  || | ||  | | ||   | || ||    |   ||  ||       ||  || |||  |||||| | ||||||||||| |||||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||| || |||||||||||||| || || || |
gtaagccccctgcggaactatacccccacctgcctaccggctaccgctgcttccttcctcggtccgtgttccaatcatgcaatttgggcgcagGATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTATCAGAGCTGCGCACCTCGCGACTATCGCCGCACAAGTACTACGAGCTTT

upper sequence: LOC_Os03g58700.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 1
---------------------------------------------gtaaggcccgccaaaccctagctccctcggtctgtgactgccccctctcgcttatcatctgccccg-atcgg----caattcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTAT
                                                |  |||  ||  | | | | | ||   | |     | | || ||    ||   |  ||   || |||      | |||||| ||||||| |||||||| |||| ||| ||  | ||||| ||||| |||||||||||||||||  |||| ||   ||| ||||| |||||||| || || ||||
gtaactcctccgttaaaccctaatctctctctcttccttctattttctattccccgcagccacgatcactctaacttttcagattcgccttccaaattcctaattgattcggatccaatttcgattcgt-cgcagGACTCGAACAATCTCAGGGACGCTTTGAAGTATTCGGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCGCCTCACAAGTACTACGAACTAT

upper sequence: LOC_Os03g58700.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA11G08390.1 (Glycine max), 3'ss of exon 1
--------------------------------------gtaaggcccgccaaaccctagctccctcggtctgt--gactgccccctctcgcttatcatctgccccgatcgg----caattcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTAT
                                       |     || |  | ||       |     | | |  || |  ||   |    |  | ||     | ||||      | |||||| ||||||| |||||||| |||| ||||||  | ||||| ||||| |||||||||||||||||  |||| ||   ||| || || |||||||| || || ||||
gtaactcctcctccgttaaaccctaacctctctcttccttctattccacgcatccacgatcacactaatttttcagattcgccttccaaattcctaattgattcggatccaatttcgattcgt-cgcagGACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88294756|gb|CI604628.1|CI604628
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|29628687|gb|CB633698.1|CB633698
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88423517|gb|CI579229.1|CI579229
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88764665|gb|CI773783.1|CI773783
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88732377|gb|CI755554.1|CI755554
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88724563|gb|CI747822.1|CI747822
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88425407|gb|CI567127.1|CI567127
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGGGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88395184|gb|CI609500.1|CI609500
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|86909644|gb|CI304717.1|CI304717
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATNCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88737359|gb|CI760867.1|CI760867
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|29634546|gb|CB639555.1|CB639555
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88313098|gb|CI592382.1|CI592382
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|29627956|gb|CB632967.1|CB632967
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88742033|gb|CI765541.1|CI765541
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88315122|gb|CI611786.1|CI611786
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88720121|gb|CI745211.1|CI745211
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88744616|gb|CI767976.1|CI767976
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88356690|gb|CI619176.1|CI619176
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88315381|gb|CI613650.1|CI613650
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|33675182|gb|CF303421.1|CF303421
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|58662129|gb|CK050809.1|CK050809
EST:     AGGGCATCGCCGGCGTGGAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88726859|gb|CI750514.1|CI750514
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88694158|gb|CI738196.1|CI738196
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|29634961|gb|CB639970.1|CB639970
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88744381|gb|CI767741.1|CI767741
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|87008988|gb|CI304931.1|CI304931
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATNCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|66920272|gb|CX107120.1|CX107120
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88719457|gb|CI742967.1|CI742967
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88314794|gb|CI608253.1|CI608253
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88316512|gb|CI622758.1|CI622758
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88388322|gb|CI627861.1|CI627861
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88744397|gb|CI767757.1|CI767757
EST:     AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
EST: gi|88301036|gb|CI592216.1|CI592216
EST:     AGGGCATCGCCGGGGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTC                         GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC
genomic: AGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 66 (downstream exon)
Score: 21

CAGGATGCTGCCGGATGGCGGCGCCGACGACGAGGAGCGGTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccg ... tcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgactgccccctctcgcttatcatctgccccgatcggcaattcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTAT
                     ttatcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaggcccgccaaaccctagctccctcggtctgtgactgccccctctcgcttatcatctgccccgatcggcaattcgtgcgcagGATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC