1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttccaatattagcaaattaatgtaatttgtgaggtacaacaattattaggaaataatattggcatagtcttttagtgattatgttgtatgtctgttccagCTGGGGATACTGTGCTAATGATGGCACCTGACTCATCAAAGAAACCATATGTGGCAAGGGTTGAGGAAATTGAGGCAACAGGACCTCAAGCCTCTCAAGT
species | Oryza sativa |
transcript | LOC_Os03g58530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttaggaaataatattggcatagtcttttagtgattatgttgtatgtctgttccagCTGGGGATACTGTGCTAATGATGGCACCTGACTCATCAAAGAAACCATATGTGGCAAGGGTTGAGGAAATTGAGGCAACAGGACCTCAAGCCTCTCAAGT
tctgttcc CT-rich tract
aaataatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccaatattagcaaattaatgtaatttgtgaggtacaacaattattaggaaataatattggcatagtcttttagtgattatgttgtatgtctgttccagCTGGGGATACTGTGCTAATGATGGCACCTGACTCATCAAAGAAACCATATGTGGCAAGGGTTGAGGAAATTGAGGCAACAGGACCTCAAGCCTCTCAAGT
- - - - - agcaaat
- - - - - - - - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttgt