1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tctttgagctgaaatttgtttatgtttgtgattgttgtgcctgctgtggtttccttcatcagtgatttattcttgttggatgtttttttttcatgcggagATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGATAATGCCAGAGTTGCGGGGTGGTGTTTGGAGAGCTCGTCTGAGGTCCAA
species | Oryza sativa |
transcript | LOC_Os03g57940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCGAGGCGCCGCCCTCCGCCGCCGCGGGCATCCGCTTCCGACGACGAT ATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGAEST: gi|58607670|gb|CK035703.1|CK035703
genomic: TCCCGAGGCGCCGCCCTCCGCCGCCGCGGGCATCCGCTTCCGACGACGATgtaagccgct ... tcatgcggagATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGA
EST: CCGCCGCCGCGGGCATACGCTTCCGACGACGAT ATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGAEST: gi|88325947|gb|CI649798.1|CI649798
genomic: CCGCCGCCGCGGGCATCCGCTTCCGACGACGATgtaagccgct ... tcatgcggagATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGA
EST: TCCCGAGGCGCCGCCCTCCGCCGCCGCGGGCATCCGCTTCCGACGACGAT ATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGAEST: gi|117246415|gb|CT843264.1|CT843264
genomic: TCCCGAGGCGCCGCCCTCCGCCGCCGCGGGCATCCGCTTCCGACGACGATgtaagccgct ... tcatgcggagATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGA
EST: TCCCGAGGCGCCGCCCTCCGCCGCCGCGGGCATCCGCTTCCGACGACGAT ATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGA
genomic: TCCCGAGGCGCCGCCCTCCGCCGCCGCGGGCATCCGCTTCCGACGACGATgtaagccgct ... tcatgcggagATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGA
gtggtttccttcatcagtgatttattcttgttggatgtttttttttcatgcggagATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGATAATGCCAGAGTTGCGGGGTGGTGTTTGGAGAGCTCGTCTGAGGTCCAA
tgtttttttttcat CT-rich tract
atgtttttttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttgagctgaaatttgtttatgtttgtgattgttgtgcctgctgtggtttccttcatcagtgatttattcttgttggatgtttttttttcatgcggagATTGGAAGGAGCACCGAAGGGTGTAGCACAAGGCCGAGTTGCATGGGGCGATAATGCCAGAGTTGCGGGGTGGTGTTTGGAGAGCTCGTCTGAGGTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - agctgaa
- - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - attgttg
- - - - - - - - - - - - - - - - - - -tgcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttg