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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactaaatatgtataaactgaatgttgttgatcttggttagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACGCGACCAACTCCGATGGGCTGGTCATCCACGACAGCACGTGGACGTACA

Basic information

species Oryza sativa
transcript LOC_Os03g57720.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g57720.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G124175_T01 (Zea mays), 3'ss of exon 3
---------------------------------------------gtaatactaaatatgta--taaactgaatgttgttgatc-ttggt-tagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACGCGACCAACTCCGATGGGCTGGTCATCCACGACAGCACGTGGACGTACA
                                              | | |  ||||| |    |   || ||  || ||  || ||     |||||||||| |||||||| |||||  | ||||||||||| |||||||||||||| |||||||| || ||| |||||||||||||  |||| ||||||||||
gtcagccccaaaacaaaagctggtgctggtcctattgatcacttcatcaaaggaaatacgctgctcctctaaacattattcttcattaacacagGTGGAAGGTGCATTCGTCCAAGGAGTAGGCTTCTTCACAAACGAGGAGTACGCAACCAACTCTGACGGGTTGGTCATCCACGATGGCACATGGACGTACA

upper sequence: LOC_Os03g57720.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G141535_T01 (Zea mays), 3'ss of exon 8
-------------------------------------gtaatactaaatatgtataaact------gaatgttgttgatc--ttggttagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACGCGACCAACTCCGATGGGCTGGTCATCCACGACAGCACGTGGACGTACA
                                     |||  |  ||| ||||              ||   |||| |||  ||    || | || |||   || || ||||| || || ||||||||||||||||| |||  ||| || ||||| ||  |||||||||||||| |||| ||||||||||
gtcagctataaaatgaacacagttcacgcagaccattgtatcaacaaaaatgtgctcctcctctaaaaacactgttcatcatttatccagATCGAGGGCTGCTTTGTCCAAGGAATAGGGTTCTTCACGAACGAGGACTACAAGACGAATTCCGACGGCTTGGTCATCCACGACGGCACATGGACGTACA

upper sequence: LOC_Os03g57720.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G141473_T01 (Zea mays), 3'ss of exon 8
---------------------------------------gtaatactaaatatgta--taaactgaatgttgttgatc-ttggt-tagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACGCGACCAACTCCGATGGGCTGGTCATCCACGACAGCACGTGGACGTACA
                                        | | |  ||||||||   |   || ||  || ||  || ||     ||||||||||||||||| | |||||  | |||||||| || |||||||||||| | || ||||| || ||| |||||||||||||  |||| ||||||||||
gtcaacctgaaaataaaaaccgctccagctgaccacttcatcaaaggaaatatgttgctcctctaaacattattcttcattaacacagGTGGAAGGCGCATTCATCCAAGGAGTAGGCTTCTTTACAAACGAGGAGTACACAACAAACTCTGAGGGGTTGGTCATCCACGATGGCACATGGACGTACA

upper sequence: LOC_Os03g57720.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G019799_T01 (Zea mays), 3'ss of exon 8
------------------------------------gtaatactaaatatgta-taaactgaatgttgttgat--cttggttagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACGCGACCAACTCCGATGGGCTGGTCATCCACGACAGCACGTGGACGTACA
                                     |   |  | | || |  |   |||||   || |  |   |   | ||||||||||||||||| | |||||  | ||||||||||||||||||||||||   || ||| |||| ||  |||||||||| ||| |||| ||||||||||
gttagcctcaaacaaaacttgatgctgttagaccgtttgccaacagaaatatgctgctctgaacactgctattgattcactcagGTGGAAGGCGCATTCATCCAAGGAGTGGGCTTCTTCACGAACGAGGAGTACAAAACGAACACCGACGGCATGGTCATCCATGACGGCACATGGACGTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatactaaatatgtataaactgaatgttgttgatcttggttagGTGGAAGGCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACGCGACCAACTCCGATGGGCTGGTCATCCACGACAGCACGTGGACGTACA
                              taatactaaatatgta  TA-rich tract