1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgagtactgaattgccaatgctttatctggttaagctgtatgatggggacaatagctttcttgatgagatggcaaactaaaattcttgccttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGTGAAATCTATGATCAGTACGGTGAAGATGCTCTCAAGGAGGGGATGGGTC
species | Oryza sativa |
transcript | LOC_Os03g57340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAG TTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGTEST: gi|218502146|gb|FG950394.1|FG950394
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAGgtgagctcgc ... ttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGT
EST: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAG TTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGTEST: gi|58658806|gb|CK047486.1|CK047486
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAGgtgagctcgc ... ttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGT
EST: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAG TTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGTEST: gi|13420510|gb|AU174600.1|AU174600
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAGgtgagctcgc ... ttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGT
EST: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAG TTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGTEST: gi|58665986|gb|CK054672.1|CK054672
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAGgtgagctcgc ... ttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGT
EST: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAG TTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGTEST: gi|88382753|gb|CI682644.1|CI682644
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAGgtgagctcgc ... ttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGT
EST: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGACACCCCGACAAG TTCAAGGAATTGGCTCAGGCTTATGAACTCCTGAGTGACCCTGAGAAGCGTEST: gi|9865401|gb|AU101151.1|AU101151
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAGgtgagctcgc ... ttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGT
EST: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAG TTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGT
genomic: GCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCGGAGACCCCGAGAAGgtgagctcgc ... ttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGT
gggacaatagctttcttgatgagatggcaaactaaaattcttgccttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGTGAAATCTATGATCAGTACGGTGAAGATGCTCTCAAGGAGGGGATGGGTC
aactaaa putative branch site (score: 92)
ttcttgccttcatttc CT-rich tract
aaactaaaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtactgaattgccaatgctttatctggttaagctgtatgatggggacaatagctttcttgatgagatggcaaactaaaattcttgccttcatttcagTTCAAGGAATTGGCTCAGGCTTATGAAGTCCTGAGTGACCCTGAGAAGCGTGAAATCTATGATCAGTACGGTGAAGATGCTCTCAAGGAGGGGATGGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - tactgaa
- - - - - - - - aatgctt
- - - - - - - - - - - - - - - - - -ctgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgc