1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgtccatttaattcttgttacctcaagtcattgagggacctggcagcatgttatgacttacacaatacctcgctaactattatggtgcatctttaacagTGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAGTGAAGTCTTTGAAGGCATCAATGTTAACAACAATGAGAAATGCATCATC
species | Oryza sativa |
transcript | LOC_Os03g55389.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAGEST: gi|58679360|gb|CK068047.1|CK068047
genomic: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGGgtaggtagca ... tctttaacagTGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAG
EST: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAGEST: gi|58660578|gb|CK049258.1|CK049258
genomic: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGGgtaggtagca ... tctttaacagTGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAG
EST: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAGEST: gi|58605491|gb|CK033524.1|CK033524
genomic: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGGgtaggtagca ... tctttaacagTGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAG
EST: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAGEST: gi|58687259|gb|CK075946.1|CK075946
genomic: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGGgtaggtagca ... tctttaacagTGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAG
EST: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTCGGAAGAGGTAAATATA
genomic: CTGCGCCCCAAGGAGTACTGGGACTACGAGGCGCTCACCGTTCAATGGGGgtaggtagca ... tctttaacagTGAGCAGGATGACTATGAAGTTGTCAGGAAAGTT-GGAAGAGGTAAATATA
agcatgttatgacttacacaatacctcgctaactattatggtgcatctttaacagTGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAGTGAAGTCTTTGAAGGCATCAATGTTAACAACAATGAGAAATGCATCATC
cgctaac putative branch site (score: 4)
catcttt putative PPT
taactattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtccatttaattcttgttacctcaagtcattgagggacctggcagcatgttatgacttacacaatacctcgctaactattatggtgcatctttaacagTGAGCAGGATGACTATGAAGTTGTCAGGAAAGTTGGAAGAGGTAAATATAGTGAAGTCTTTGAAGGCATCAATGTTAACAACAATGAGAAATGCATCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - -attcttg
- - - - - - - - - - - - - - - - - - ggacctg
- - - - - - - - - - - - - - - - - - - - - - -agcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgca