1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagcaagttttgacctattttaattctatcatatgctacactacatattgttatttctcttattcttgtataacagcctttttatttctttgttggcagGCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTGTTTACCAAATCAGGGATGTTATTCTTGGAAGTTAGTCTCATAGCATTTC
species | Oryza sativa |
transcript | LOC_Os03g54920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAG GCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTGEST: gi|218499304|gb|FG956941.1|FG956941
genomic: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAGgttcgctttg ... ttgttggcagGCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTG
EST: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAG GCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTGEST: gi|88370574|gb|CI590152.1|CI590152
genomic: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAGgttcgctttg ... ttgttggcagGCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTG
EST: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAG GCGTGGCAATGTATGCCEST: gi|88448508|gb|CI693893.1|CI693893
genomic: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAGgttcgctttg ... ttgttggcagGCGTGGCAATGTATGCC
EST: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAG GCGTGGCAATGTATGCCTGATAGEST: gi|88302311|gb|CI668157.1|CI668157
genomic: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAGgttcgctttg ... ttgttggcagGCGTGGCAATGTATGCCTGATAG
EST: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAG GCGTGGCAATGT
genomic: CGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAGgttcgctttg ... ttgttggcagGCGTGGCAATGT
atattgttatttctcttattcttgtataacagcctttttatttctttgttggcagGCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTGTTTACCAAATCAGGGATGTTATTCTTGGAAGTTAGTCTCATAGCATTTC
gtataac putative branch site (score: 37)
cctttttatttctttg putative PPT
tttttatttctttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagcaagttttgacctattttaattctatcatatgctacactacatattgttatttctcttattcttgtataacagcctttttatttctttgttggcagGCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTGTTTACCAAATCAGGGATGTTATTCTTGGAAGTTAGTCTCATAGCATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
caagcaa
- - - - - - - - - - - - - - - - - tgctaca