1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagctgcggatccatggatttctctccgtttcccccttgtcatttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTC
species | Oryza sativa |
transcript | LOC_Os03g54890.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58599534|gb|CK010062.1|CK010062
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|88575679|gb|CI669824.1|CI669824
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58597252|gb|CK007780.1|CK007780
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|88675161|gb|CI729274.1|CI729274
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGEST: gi|27577972|gb|CB000667.1|CB000667
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGG
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCAEST: gi|88677196|gb|CI731309.1|CI731309
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAEST: gi|5443703|gb|AU064389.2|AU064389
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58664019|gb|CK052705.1|CK052705
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|88760939|gb|CI770495.1|CI770495
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCEST: gi|33829708|gb|CF340677.1|CF340677
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGC
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAEST: gi|88672605|gb|CI726721.1|CI726721
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGA
EST: CATCCACTTCCGCTCCCCCGCCCAAGATCCTCTGGCCGC-CCGTCCGGGG CATGATCCCGCACAAGAACAAGAGGGGACAGGCGGCGCTGEST: gi|58673512|gb|CK062198.1|CK062198
genomic: CATCCACTTCCGCTCCCCCGCC-AAGATCCTCTGGC-GCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTG
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|86888621|gb|CI305689.1|CI305689
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: TCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58601861|gb|CK012389.1|CK012389
genomic: TCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58695434|gb|CK084121.1|CK084121
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|218480584|gb|FG964922.1|FG964922
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAATGCTGAAEST: gi|88294333|gb|CI667307.1|CI667307
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|218498099|gb|FG967283.1|FG967283
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58594137|gb|CF992445.1|CF992445
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGEST: gi|218502993|gb|FG964681.1|FG964681
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGG
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|33662327|gb|CF293294.1|CF293294
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|88583011|gb|CI699482.1|CI699482
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCCCAAGACCAAGAGGGGAGAGGCGGNGCTGGCAAGGCEST: gi|58594149|gb|CF992457.1|CF992457
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGC
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58691553|gb|CK080240.1|CK080240
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58597148|gb|CK007676.1|CK007676
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|27577829|gb|CB000524.1|CB000524
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|88573569|gb|CI665338.1|CI665338
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCATCCACTTCCGCTCCCCCGCCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGNGCTGGCAAGGCTGAAEST: gi|58677624|gb|CK066311.1|CK066311
genomic: CCATCCACTTCCGCTCCCCCGCC-AAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|218484320|gb|FG953179.1|FG953179
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAEST: gi|58595748|gb|CK006276.1|CK006276
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
EST: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGG CATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
genomic: CCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctgcg ... atccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAA
atttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcagCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTC
ttctgat putative branch site (score: 47)
tccccgc putative PPT
tgatttt TA-rich tract