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gtacggttgattgcgttctatcggttgcctttgttcagattatttgggtgttaaaaatgtttaatctgaaagagaaatcagtgcctgatgggagtgaatgatgtgaatttctggtggctctgggttttccttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG
species | Oryza sativa |
transcript | LOC_Os03g52840.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|58689542|gb|CK078229.1|CK078229
genomic: GTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: GATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|29681406|gb|CB677681.1|CB677681
genomic: GATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: GGGGTACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|14571290|gb|BI118658.1|BI118658
genomic: GGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: ACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|38472219|gb|CF956350.1|CF956350
genomic: ACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: GCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|29674038|gb|CB670313.1|CB670313
genomic: GCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: ACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|29681405|gb|CB677680.1|CB677680
genomic: ACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: GGGGTACCCCGGCTCTAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|84117692|gb|CD285458.1|CD285458
genomic: GGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: GTACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|33381615|gb|CF196958.1|CF196958
genomic: GTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: AACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|4714773|gb|AU055890.1|AU055890
genomic: AACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: AACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|88413328|gb|CI581343.1|CI581343
genomic: AACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: AACAAGTACAGCGAGGGGTACCCCGGCGCGAGAAACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|29674139|gb|CB670414.1|CB670414
genomic: AACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: ACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTEST: gi|11442623|gb|BF430526.1|BF430526
genomic: ACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
EST: AACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGA ATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
genomic: AACAAGTACAGCGAGGGGTACCCCGGCGCGAGATACTACGGTGGAAACGAgtacggttga ... ttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTT
tgatgggagtgaatgatgtgaatttctggtggctctgggttttccttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG
gcctgat putative branch site (score: 262)
ttttccttgc putative PPT
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggttgattgcgttctatcggttgcctttgttcagattatttgggtgttaaaaatgtttaatctgaaagagaaatcagtgcctgatgggagtgaatgatgtgaatttctggtggctctgggttttccttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG