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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccgctcttcttcctccattttttctttaatttttttttgtttatatcgttgccctcttgagaaatggtgcttaatccgttccatggattggtttgggttcgtgcgctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC

Basic information

species Oryza sativa
transcript LOC_Os03g52840.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 1
-------------------------------------------------gttccgctcttcttcctccattttt--tctttaatttttttttgtttatatcgttgccctcttgagaaa---tggtgcttaatccgttccatggattggtttgggttcgt--------gcgctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
                                                     || || |||  |    | |||    | ||   |         |  |  |    |      |||||    |   | | ||||||||    |||| | || | || ||        | |  | ||||||||||||| |||||||||||||||||||||||| |||||
gtacgacaccgactgctgcttcttgttcttattatcgtggcacggcgccacggcggtcatctgtcattgtctttgtcttctaccctacccacccctcgaaagaaaacaaacaaagaaagcacgactcatgatccgttcttctgatttgatttgatttgtttttttttgtgtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88424301|gb|CI581856.1|CI581856
EST:     ACGCCCTCCGCCGCCAGCCGTTCTCCCGCATCACCCCGCTCTATTACATG                         GCGTCCCTGCCGGGGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58612638|gb|CK040350.1|CK040350
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88403169|gb|CI570910.1|CI570910
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88424270|gb|CI581825.1|CI581825
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29615988|gb|CB621000.1|CB621000
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29624282|gb|CB629293.1|CB629293
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GAGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58592438|gb|CF990746.1|CF990746
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58612303|gb|CK040015.1|CK040015
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29614138|gb|CB619151.1|CB619151
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29636379|gb|CB641388.1|CB641388
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29619822|gb|CB624834.1|CB624834
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29638078|gb|CB643087.1|CB643087
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88344989|gb|CI625835.1|CI625835
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCATCCCGTTCTACTACATG                         GCGTCCCTGCCGGCGATGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58610782|gb|CK038494.1|CK038494
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58610008|gb|CK038041.1|CK038041
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29621132|gb|CB626143.1|CB626143
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29641599|gb|CB646606.1|CB646606
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58609425|gb|CK037458.1|CK037458
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88426571|gb|CI579400.1|CI579400
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58613274|gb|CK040986.1|CK040986
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|117244508|gb|CT848411.1|CT848411
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29614628|gb|CB619641.1|CB619641
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29670801|gb|CB667076.1|CB667076
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58665373|gb|CK054059.1|CK054059
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29646105|gb|CB651112.1|CB651112
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58657072|gb|CK045752.1|CK045752
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88428580|gb|CI565048.1|CI565048
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29618931|gb|CB623943.1|CB623943
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29618036|gb|CB623048.1|CB623048
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29667991|gb|CB664266.1|CB664266
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29633899|gb|CB638908.1|CB638908
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29634685|gb|CB639694.1|CB639694
EST:     ACACCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGACATATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29615274|gb|CB620286.1|CB620286
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88734102|gb|CI757610.1|CI757610
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29635394|gb|CB640403.1|CB640403
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29634586|gb|CB639595.1|CB639595
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29646445|gb|CB651452.1|CB651452
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58611875|gb|CK039587.1|CK039587
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58605862|gb|CK033895.1|CK033895
EST:     AAGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29621678|gb|CB626689.1|CB626689
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58605171|gb|CK033204.1|CK033204
EST:     AGGCGCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88447579|gb|CI584583.1|CI584583
EST:     ACGCCCTCCGCCGCCAGCCGTTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGAGGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29634602|gb|CB639611.1|CB639611
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29678030|gb|CB674305.1|CB674305
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88406273|gb|CI596400.1|CI596400
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29622694|gb|CB627705.1|CB627705
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58613051|gb|CK040763.1|CK040763
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88397959|gb|CI583277.1|CI583277
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGAGGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29665918|gb|CB662193.1|CB662193
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|38471328|gb|CF955459.1|CF955459
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58654507|gb|CK043187.1|CK043187
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29630142|gb|CB635151.1|CB635151
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88826721|gb|CI777286.1|CI777286
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58606494|gb|CK034527.1|CK034527
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29613481|gb|CB618494.1|CB618494
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88745591|gb|CI768951.1|CI768951
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGAAGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|87023586|gb|CI286337.1|CI286337
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58673445|gb|CK062131.1|CK062131
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88760569|gb|CI770125.1|CI770125
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88733450|gb|CI756627.1|CI756627
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|88398541|gb|CI595942.1|CI595942
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCAACCCGCTCTACTACATG                         GCGT-CCTGCCGGCGACGGAGGAGAGATTCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|86901078|gb|CI306267.1|CI306267
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|58605751|gb|CK033784.1|CK033784
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29634567|gb|CB639576.1|CB639576
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
EST: gi|29687893|gb|CB684168.1|CB684168
EST:     ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATG                         GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
genomic: ACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctct ... gctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaatggtgcttaatccgttccatggattggtttgggttcgtgcgctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC
         gcttaat  putative branch site (score: 4)
                                            cgctctc  putative PPT
           ttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttccgctcttcttcctccattttttctttaatttttttttgtttatatcgttgccctcttgagaaatggtgcttaatccgttccatggattggtttgggttcgtgcgctctcgcagGCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC