1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttggtagaagccgaccatctgttaatcctgagttttcactttcctgtcccaagaaataaggcgtcagatccactcaaatatgtagagtaaacttcacagcagattttctaaatcattggtatcatatgaacttcttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACTGCTGGATGAGGCCAGAGGATATCGATTACCCCAGACCTGTCACTGAGT
species | Oryza sativa |
transcript | LOC_Os03g52630.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|33676216|gb|CF304455.1|CF304455
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|58664223|gb|CK052909.1|CK052909
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|58662741|gb|CK051427.1|CK051427
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|27553984|gb|CA997884.1|CA997884
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|58690204|gb|CK078891.1|CK078891
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|58669612|gb|CK058298.1|CK058298
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|29634446|gb|CB639455.1|CB639455
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|29674435|gb|CB670710.1|CB670710
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|58609592|gb|CK037625.1|CK037625
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|13447512|gb|AU181006.1|AU181006
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACEST: gi|58674076|gb|CK062762.1|CK062762
genomic: TATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
EST: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAG GTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
genomic: TCAAGACCTTCAATTCATCAGCCGATACTATCGATCGGATCGTCGCACAGgttggtagaa ... cttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTAC
aaacttcacagcagattttctaaatcattggtatcatatgaacttcttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACTGCTGGATGAGGCCAGAGGATATCGATTACCCCAGACCTGTCACTGAGT
ttctaaa putative branch site (score: 2)
cttcttatt putative PPT
attttctaaatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtagaagccgaccatctgttaatcctgagttttcactttcctgtcccaagaaataaggcgtcagatccactcaaatatgtagagtaaacttcacagcagattttctaaatcattggtatcatatgaacttcttattgcagGTGGGTGTAGGTGACACCTCAAAAGGTGGTGCCCAACCTAATGACCACTACTGCTGGATGAGGCCAGAGGATATCGATTACCCCAGACCTGTCACTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT