1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttagattactcatctagaaaatagtactctctgatccatgaggatgttgagcaaaggaccacattatatttgaatcaatagcatgtaatttctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAGCATGCCTCTCGCTTCGATTCAGATGACATTGAGCAACAAGAAGCAAAG
species | Oryza sativa |
transcript | LOC_Os03g51430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCGCCGCTGNGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTG GATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAGEST: gi|88449348|gb|CI582220.1|CI582220
genomic: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTGgtatggagac ... tctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAG
EST: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTG GATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAGEST: gi|88400508|gb|CI593583.1|CI593583
genomic: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTGgtatggagac ... tctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAG
EST: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTG GATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAGEST: gi|88433282|gb|CI591722.1|CI591722
genomic: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTGgtatggagac ... tctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAG
EST: CCGCCGCCGCTGCGTCGGTTCTGAGTTTTGCTTCGTCTCCGGGCTCGATG GATTGAGCTTTGTCAAGAGAAGAAGAAGTCATTGTTTAGATTTAGGAAAAAEST: gi|29657775|gb|CB654050.1|CB654050
genomic: CCGCCGCCGCTGCGTCGGTTCTGAG-TTTGCTTCGTCTCCGGGCTCGCTGgtatggagac ... tctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCA-TGTTTAGCTTTAGGAAAAA
EST: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTG GATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAGEST: gi|88391697|gb|CI600886.1|CI600886
genomic: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTGgtatggagac ... tctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAG
EST: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTG GATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAGEST: gi|88443587|gb|CI594561.1|CI594561
genomic: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTGgtatggagac ... tctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAG
EST: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTG GATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAG
genomic: GCCGCCGCCGCTGCGTCGGTTCTGAGTTTGCTTCGTCTCCGGGCTCGCTGgtatggagac ... tctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAG
gttgagcaaaggaccacattatatttgaatcaatagcatgtaatttctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAGCATGCCTCTCGCTTCGATTCAGATGACATTGAGCAACAAGAAGCAAAG
tttctgtttc CT-rich tract
attatatttgaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagattactcatctagaaaatagtactctctgatccatgaggatgttgagcaaaggaccacattatatttgaatcaatagcatgtaatttctgtttcagGATTGAGCTTTGTCAAGAGCAGAAGAAGTCATGTTTAGCTTTAGGAAAAAGCATGCCTCTCGCTTCGATTCAGATGACATTGAGCAACAAGAAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - -ctagaaaa
- - - - - - - - - - - - - - - - -atccatg
- - - - - - - - - - - - - - - - - - - - - -atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgta