Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacgcacgctcgcctctgtctcgagcgccattggcgccgatcgattcggtgattgattgggagttttaattttggatccgggcggggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTCGCGTCG

Basic information

species Oryza sativa
transcript LOC_Os03g51080.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g51080.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G826838_T01 (Zea mays), 3'ss of exon 1
--------------------------gcacgcacgctcgcctctgtctcgagcgccattggcgccgatcgattcggtgattgattgggagttttaattttggatccgggcggggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTCGCGTCG
                           | |||   |||||    | |  ||||   |||  |||    || ||   |  ||  |||||           ||   |||  ||   |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
gcacgtccttcctccctgccttccctccgcgctgtctcgctcgagccgagagcattatttacgcgccgcggtt---ttcttcgttgggctacccgccgctga--ccgcccg---cccgcagGTACCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGGAACCCGCGGCTGAACCTGGCGTCC

upper sequence: LOC_Os03g51080.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S68_116V6.1 (Physcomitrella patens), 3'ss of exon 1
------------gcacgcac-gctcgcctctgtctcgagcgccattggcgccgatcgattcggtgattgattgggagttttaattttggatccgggcggggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTCGCGTCG
            ||   ||  ||  || | ||| |||   |    |      |||  ||| || | |    ||  |  | | | | |   |            | |||||||   || || |||| | | |  |||||||| || |||||||||||||||| ||||||||| ||| |||| |||||||| ||  ||||  | ||||| 
tggagaggagaggcttacattgcaagcttttgt-tcgtttggggctatgttggatacatttggcggtattgtgctaactatcactgttcttttcaa-------tccagGTTCACCATTCCCGAGCGGGCAACACCCAAGGATGCCGCGTACCAGATCATCAGCGACGAGCTCATGTTGGATGGCAACCCTCGCTTGAATTTGGCGTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88433314|gb|CI591754.1|CI591754
EST:     TCCGTCCAATCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58658903|gb|CK047583.1|CK047583
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCGGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88735063|gb|CI758571.1|CI758571
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGNACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58690704|gb|CK079391.1|CK079391
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88400383|gb|CI593458.1|CI593458
EST:     TCCGTCCACTCCATGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGTGCGGCGTACCAGATCA
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAG-GCGGCGTACCAGATCA
EST: gi|88414709|gb|CI604067.1|CI604067
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58612489|gb|CK040201.1|CK040201
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|29617567|gb|CB622579.1|CB622579
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88372387|gb|CI619717.1|CI619717
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88760893|gb|CI770449.1|CI770449
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88731678|gb|CI755291.1|CI755291
EST:     TCNGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88738481|gb|CI761989.1|CI761989
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88360337|gb|CI612056.1|CI612056
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88398239|gb|CI588127.1|CI588127
EST:     TCCGTCCACTCCACGTTCGCCT-CCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGTGCGGCGTACCAGATCA
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAG-GCGGCGTACCAGATCA
EST: gi|88425374|gb|CI567094.1|CI567094
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58665750|gb|CK054436.1|CK054436
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88738291|gb|CI761799.1|CI761799
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88399237|gb|CI618427.1|CI618427
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88443538|gb|CI597005.1|CI597005
EST:     TACGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88395234|gb|CI611151.1|CI611151
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88721875|gb|CI743387.1|CI743387
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|117217697|gb|CT845092.1|CT845092
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58687897|gb|CK076584.1|CK076584
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88400360|gb|CI593435.1|CI593435
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58663096|gb|CK051782.1|CK051782
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88735280|gb|CI758788.1|CI758788
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58692856|gb|CK081543.1|CK081543
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58663799|gb|CK052485.1|CK052485
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|29613133|gb|CB618146.1|CB618146
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|58607481|gb|CK035514.1|CK035514
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTTCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGGGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88727429|gb|CI751084.1|CI751084
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88304126|gb|CI599814.1|CI599814
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCATATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88392957|gb|CI614839.1|CI614839
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGGGTATCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88330189|gb|CI658494.1|CI658494
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: gi|88363859|gb|CI607169.1|CI607169
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGT
EST: gi|29659019|gb|CB655294.1|CB655294
EST:     TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAG                         GTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 72 (downstream exon)
Score: 20

GCTTCCGATCCGCCATGGTGCTCTCCCACGGCGTGTCGGGCTCCGATGAGTCCGTCCACTCCACGTTCGCCTCCCGCTACGTCCGCACCTCCCTCCCCAGgcacgcacgc ... gggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTCGCGTCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgattcggtgattgattgggagttttaattttggatccgggcggggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTCGCGTCG
                        ttttaat  putative branch site (score: 20)
                        ttttaattttggat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcacgcacgctcgcctctgtctcgagcgccattggcgccgatcgattcggtgattgattgggagttttaattttggatccgggcggggcttgcagGTTCCGGATGCCGGAGCAGTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTCGCGTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA