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...ataatgatggtagcagattcagaagacattgttgactgctttgtctgtagcagtgaaggtattaataccgaatgctaattctgctatttccatcatgcagGATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAGGTTTTCAATGCCAGCCCCTTCGCTTCCTCATGGCCGTCAT
species | Oryza sativa |
transcript | LOC_Os03g49900.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGCTCCTCCTCGCGCTCAAGGTCGACGGCCGCACAGCCTACTCCTGGTG GATTATATTCATCCCTCTATGGCTATTTCATGGCATTATTGCCCGTGGAAGEST: gi|29643978|gb|CB648985.1|CB648985
genomic: ACGCTCCTCCTCGCGCTCAAAGTCGACGGCCGCACAGCCTACTCCTGGTGgtaacgctcc ... catcatgcagGATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAG
EST: ACGCTCCTCCTCGCGCTCAAAGTCGACGGCCGCACAGCCTACTCCTGGTG GATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAGEST: gi|29638900|gb|CB643909.1|CB643909
genomic: ACGCTCCTCCTCGCGCTCAAAGTCGACGGCCGCACAGCCTACTCCTGGTGgtaacgctcc ... catcatgcagGATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAG
EST: ACGCTCCTCCTCGCGCTCAAAGTCGACGGCCGCACAGCCTACTCCTGGTG GATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAGEST: gi|29658594|gb|CB654869.1|CB654869
genomic: ACGCTCCTCCTCGCGCTCAAAGTCGACGGCCGCACAGCCTACTCCTGGTGgtaacgctcc ... catcatgcagGATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAG
EST: ACGCTCCTCCTCGCGCTCAAAGTCGACGGCCGCACAGCCTACTCCTGGTG GATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAG
genomic: ACGCTCCTCCTCGCGCTCAAAGTCGACGGCCGCACAGCCTACTCCTGGTGgtaacgctcc ... catcatgcagGATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAG
tgtagcagtgaaggtattaataccgaatgctaattctgctatttccatcatgcagGATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAGGTTTTCAATGCCAGCCCCTTCGCTTCCTCATGGCCGTCAT
tgctaat putative branch site (score: 56)
ctatttcc putative PPT
tattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatgatggtagcagattcagaagacattgttgactgctttgtctgtagcagtgaaggtattaataccgaatgctaattctgctatttccatcatgcagGATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAGGTTTTCAATGCCAGCCCCTTCGCTTCCTCATGGCCGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- aatgatg
- - - - -gtagcag
- - - - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - -ctgcttt
- - - - - - - - - - - - - - - - - - - - - - ctgtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgct