1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagcatcctctgttcgaatcgcctccatgatctccagatccatctcgtccggttcttacggtgaaatggattgcgtgtgcagGTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTCTCGGGGACGAAGAGGCTGCACCTCCGGGCGGAGACAAGGGAGGACAGGG
species | Oryza sativa |
transcript | LOC_Os03g49770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAG GTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTCEST: gi|29636220|gb|CB641229.1|CB641229
genomic: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAGgtcagcatcc ... gcgtgtgcagGTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTC
EST: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAG GTGTCGTCCGTGCGGGAGAGCANATCGGATGACAGGAGGTTCTCGATCTTCEST: gi|88411940|gb|CI566669.1|CI566669
genomic: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAGgtcagcatcc ... gcgtgtgcagGTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTC
EST: CCAACGGTCACCAACTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAG GTGTCGTTCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTCEST: gi|29634233|gb|CB639242.1|CB639242
genomic: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAGgtcagcatcc ... gcgtgtgcagGTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTC
EST: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAG GTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTCEST: gi|29633376|gb|CB638385.1|CB638385
genomic: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAGgtcagcatcc ... gcgtgtgcagGTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTC
EST: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAG GTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTC
genomic: CCAACGGTCACCACCTACCCCGCAAGCCTATCGGCGAAATTCACCTCAAGgtcagcatcc ... gcgtgtgcagGTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTC
tgatctccagatccatctcgtccggttcttacggtgaaatggattgcgtgtgcagGTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTCTCGGGGACGAAGAGGCTGCACCTCCGGGCGGAGACAAGGGAGGACAGGG
ttcttac putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcatcctctgttcgaatcgcctccatgatctccagatccatctcgtccggttcttacggtgaaatggattgcgtgtgcagGTGTCGTCCGTGCGGGAGAGCAGATCGGATGACAGGAGGTTCTCGATCTTCTCGGGGACGAAGAGGCTGCACCTCCGGGCGGAGACAAGGGAGGACAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA