1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcgggcggtcgcctcgcctcatccttttctcctcaatttttcgtgaattgggacgtacgagtagtagattagtttgttgctttgcttgcctcagATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAGTCTGATCTCCTCAACGGCAAATGGGAGCTTCTCTACACCACCTCAGAATCCA
species | Oryza sativa |
transcript | LOC_Os03g49720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAG ATTGTTCAGCAACTEST: gi|88760827|gb|CI770383.1|CI770383
genomic: TCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAGgtgagcgggc ... cttgcctcagATTGTTCAGCAACT
EST: TCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAG ATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGEST: gi|11026116|gb|AU162717.1|AU162717
genomic: TCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAGgtgagcgggc ... cttgcctcagATTGTTCAGCAACTGGAGGAGGTGAACCAAGTG
EST: TCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAG ATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAAGTCEST: gi|58589762|gb|CF988070.1|CF988070
genomic: TCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAGgtgagcgggc ... cttgcctcagATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTCAA-GTC
EST: TCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAG ATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAGTCT
genomic: TCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAGgtgagcgggc ... cttgcctcagATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAGTCT
ttcgtgaattgggacgtacgagtagtagattagtttgttgctttgcttgcctcagATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAGTCTGATCTCCTCAACGGCAAATGGGAGCTTCTCTACACCACCTCAGAATCCA
ctttgctt CT-rich tract
attagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgggcggtcgcctcgcctcatccttttctcctcaatttttcgtgaattgggacgtacgagtagtagattagtttgttgctttgcttgcctcagATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAGTCTGATCTCCTCAACGGCAAATGGGAGCTTCTCTACACCACCTCAGAATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT