Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgcctcttcagccccctcctttcttcttcttctcgttgttgttgttgttgttggctagctttgtttgattcggcgagcacggcggatgtgggagcgattgtttcatggttgctgctttccatttcttgcagTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTTCCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGT

Basic information

species Oryza sativa
transcript LOC_Os03g49150.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49150.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G832740_T01 (Zea mays), 3'ss of exon 1
gttcgcctcttcagccccctcctttcttcttcttctcgttgttgttgttgttgttggctagctttgtttgattcggcgagcacggcggatgt--gggagcgat-tgtttcatggttgctgctttcc-----------atttcttgcagTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTTCCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGT
|||| ||| | || || | | | ||| | | | | | | | | | || | |||||||||||| | | ||| | || | || | | | |||||| ||||||| ||| ||||||| ||||||||||| ||||||||||||||| |||||||
gttcctctccacc-cctccgcgtcccctctgccagacaaaaaaaatagagaggaaaatgggaaatttcttgtt--gtccccacggcggatgtacgcgtgcggtgtggctgatagcggtttctttccttggtgtttcgatttcttccagGCCTTCCAGTGCAAGCACGGCAAGGCGTACCTCTTCCATAAGGT--------------------------------------------------------

upper sequence: LOC_Os03g49150.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G856436_T02 (Zea mays), 3'ss of exon 1
-----gttcgcctcttcagccccctcctttcttcttcttctcgttgttgttgttg------ttgttggctagctttgtttgattcggcga-------gcacggcggatgtgggagcgattgtttcatggttgctgctttccatttcttgcagTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTTCCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGT
||| | |||| || | |||| || | | | || ||| ||| | | ||| | || | || | | || | | | | |||| ||||||| ||| ||||||| |||| |||||||||||||||||||||| |||||||
gttcctctcgacccttccgcgtc-tcctcgctgccaaaaaaaaagaaagaaggaaagaagattcccagctgattttcgccgtccccgcggcggatgtgtgtggtgaggctgacaacagcgcttgcttttcttgttgtttcgatttcttccagGCCTTCCACTGCAGGCACGGGAAGGCGTACCTCTTCCATAAGGT--------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacggcggatgtgggagcgattgtttcatggttgctgctttccatttcttgcagTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGTGTAAGTGGCCTCTCCTTCCCGGGCCTCATCTTGCCCTCGAATTTTTGTTCGCTCGT
                                   ctgctttccatttctt  CT-rich tract
 attgttt  TA-rich tract