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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgcctcttcagccccctcctttcttcttcttctcgttgttgttgttgttgttggctagctttgtttgattcggcgagcacggcggatgtgggagcgattgtttcatggttgctgctttccatttcttgcagTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGT

Basic information

species Oryza sativa
transcript LOC_Os03g49150.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49150.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G832740_T01 (Zea mays), 3'ss of exon 1
gttcgcctcttcagccccctcctttcttcttcttctcgttgttgttgttgttgttggctagctttgtttgattcggcgagcacggcggatgt--gggagcgat-tgtttcatggttgctgctttcc-----------atttcttgcagTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGT
||||  |||  |  || || | |  | ||| |    |        |   |  |       |   | | |  ||  |    ||||||||||||  | | ||| | ||  | || |  | | ||||||           ||||||| ||| ||||||| ||||||||||| ||||||||||||||| |||||||
gttcctctccacc-cctccgcgtcccctctgccagacaaaaaaaatagagaggaaaatgggaaatttcttgtt--gtccccacggcggatgtacgcgtgcggtgtggctgatagcggtttctttccttggtgtttcgatttcttccagGCCTTCCAGTGCAAGCACGGCAAGGCGTACCTCTTCCATAAGGT

upper sequence: LOC_Os03g49150.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G856436_T02 (Zea mays), 3'ss of exon 1
-----gttcgcctcttcagccccctcctttcttcttcttctcgttgttgttgttg------ttgttggctagctttgtttgattcggcga-------gcacggcggatgtgggagcgattgtttcatggttgctgctttccatttcttgcagTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGT
       ||| | |||| ||  | ||||  || |              |  |         ||    |||   |||    |   | |||        |   || |    ||  | |     || | |   |  |  |||| ||||||| ||| ||||||| |||| |||||||||||||||||||||| |||||||
gttcctctcgacccttccgcgtc-tcctcgctgccaaaaaaaaagaaagaaggaaagaagattcccagctgattttcgccgtccccgcggcggatgtgtgtggtgaggctgacaacagcgcttgcttttcttgttgtttcgatttcttccagGCCTTCCACTGCAGGCACGGGAAGGCGTACCTCTTCCATAAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacggcggatgtgggagcgattgtttcatggttgctgctttccatttcttgcagTCCTTCCATTGCAAGCACGGGAAGGCGTACCTCTTCAATAAGGT
                                   ctgctttccatttctt  CT-rich tract
                    attgttt  TA-rich tract