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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactatatatactgaattcctcacatcctaagcacacacatgcatgtgattaatataattcatggcaattgttgcctctctttcaaattcttttttcttcccatcttctttttgaatttatgtgtgtgtggaactggttttgattttgtgaaacctaagGTCGGAGCTCCGCCGGAGGTCGTCGGCCGGCTTTCCGCCCTCGCCGGCGAGCTCGACTCGCGTGCAGAAGACAGGTACCTTCAAGGGCAGTCGTCAGACC

Basic information

species Oryza sativa
transcript LOC_Os03g47022.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g47022.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G002225_T01 (Zea mays), 3'ss of exon 1
------gtaaactatatatactgaattcctcacatcctaagcacacacatgcatgtgattaatataattcatggcaattgttgcctctctttcaaattcttttt-tcttcccatcttctttttgaatttatgtgtgtgtggaactggttttga---ttttgtgaaacctaagGTCGGAGCTCCGCCGGAGGTCGTCGGCCGGCTTTCCGCCCTCGCCGGCGAGCTCGACTCGCGTGCAGAAGACAGGTACCTTCAAGGGCAGTCGTCAGACC
      ||  |  | || | ||  |  | |   || |||     |    |||  | ||   | |     ||||||  || |||  | | ||      |   |   || |   || || || |  ||||| |   || |         |||||    |||| ||  || | |||||||||| ||||| ||| | |||||||||||||| |||||||| |  ||  ||||   |  | |||| ||||   |    ||  | |   || ||||||
gtatgcgtgcagcagatttcctagagacatacaattctacagctaattttgccagagagcgaaagctagcatggc--ttcttgatttttttatgtgctagctccgtccttatatattattctccaattttt-catgaggaagttctcttttgtattttttttgttacttgagGTCGGAGCGCCGCCAGAGATTGTCGGCCGGCTTTCTGCCCTCGCTGATGACGTCGAAATGAATTCAGACGACAAACAAGAACAGCGACGAGCGGCAGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctttttgaatttatgtgtgtgtggaactggttttgattttgtgaaacctaagGTCGGAGCTCCGCCGGAGGTCGTCGGCCGGCTTTCCGCCCTCGCCGGCGAGCTCGACTCGCGTGCAGAAGACAGGTACCTTCAAGGGCAGTCGTCAGACC
                                 ttttgat  putative branch site (score: 4)
     ttttgaatttatgt  TA-rich tract