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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcccgcgtgctggagctcgtgagctgtctatagggttttgattggagggattttcgtttgatccgttgtttctggtgaggtgaatgatgccggattcgtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATCCTCCGCCGCCGCTGCCGGCGACAAGGGCGGCGGGGTCGACCCGTCTCTG

Basic information

species Oryza sativa
transcript LOC_Os03g44200.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88367803|gb|CI570542.1|CI570542
EST:     CCACCGTCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCCTGCAT
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCC-TGCAT
EST: gi|88695425|gb|CI737928.1|CI737928
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|87008859|gb|CI304802.1|CI304802
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|88343389|gb|CI621757.1|CI621757
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|88359526|gb|CI621057.1|CI621057
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|86850269|gb|CI305508.1|CI305508
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|117227438|gb|CT846590.1|CT846590
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|88444159|gb|CI594532.1|CI594532
EST:     CCAGCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|88336843|gb|CI626923.1|CI626923
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|88726389|gb|CI750044.1|CI750044
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
EST: gi|88386061|gb|CI570696.1|CI570696
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCCTGCAT
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCC-TGCAT
EST: gi|88317275|gb|CI627924.1|CI627924
EST:     CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTG                         GTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC
genomic: CCACCGCCCCTGGAGGCTGGAGCCGTGCTCTCCGGATCGGCGTTGGATTGgtgagcccgc ... gtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtttgatccgttgtttctggtgaggtgaatgatgccggattcgtggatgcagGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATATGAAGCCCCCTGCATCCTCCGCCGCCGCTGCCGGCGACAAGGGCGGCGGGGTCGACCCGTCTCTG
   gtttgat  putative branch site (score: 5)