1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttctttttggtgtactgccactaatcaattgatctctgcaaatatctgaacctggtgtactgccactaatcaattcatggtgttggaggtgtgtgcagGAAGTGGCGCCGCTGACATCCGGCAGGCTCTCGCACAGCAGCGGCCCTCTCACCGGCGGCGGCTCCATCACCGACAGCCCGCCGGTCTCGCCGGAGATCG
species | Oryza sativa |
transcript | LOC_Os03g43510.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCCGCTGCCACCTCGCAGCTCATCATGGAGCGGATCCTCGCGCAGTCG GAAGTGGCGCCGCTGACATCCGGCAGGCTCTCGCACAGCAGCGGCCCTCTC
genomic: CCTCCGCTGCCACCTCGCAGCTCATCATGGAGCGGATCCTCGCGCAGTCGgtgcgtgcgt ... gtgtgtgcagGAAGTGGCGCCGCTGACATCCGGCAGGCTCTCGCACAGCAGCGGCCCTCTC
atctgaacctggtgtactgccactaatcaattcatggtgttggaggtgtgtgcagGAAGTGGCGCCGCTGACATCCGGCAGGCTCTCGCACAGCAGCGGCCCTCTCACCGGCGGCGGCTCCATCACCGACAGCCCGCCGGTCTCGCCGGAGATCG
cactaat putative branch site (score: 16)
taatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctttttggtgtactgccactaatcaattgatctctgcaaatatctgaacctggtgtactgccactaatcaattcatggtgttggaggtgtgtgcagGAAGTGGCGCCGCTGACATCCGGCAGGCTCTCGCACAGCAGCGGCCCTCTCACCGGCGGCGGCTCCATCACCGACAGCCCGCCGGTCTCGCCGGAGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - -tttggtg
- - - - - - - tactgcc
- - - - - - - - - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - cctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg