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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC

Basic information

species Oryza sativa
transcript LOC_Os03g37970.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC--------------
          |||   ||  || || | |     |  ||| | | | |  |  || |  ||  | | |  |       | ||||   ||| |   |     |  | | |  | |   | |  ||||| ||||| ||||| |||||||| || || ||||||   |||||||||||||||||||| ||||| ||||||||               
----------ttgttagt-tatctgctatt-ttacactatcttgtgcttatcctattacct--tattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC--------------
  ||| | |||      ||  || |  ||  |   ||  ||||   ||     || |   | || | |   ||||  |||||       ||||  |     |  | | |  | |   |    ||||| ||||| ||||| |||||||||||||| ||||||   |||||||||||||||||||| ||||| ||||||||               
--gtgattgatctgctatggttacg--ctttcttgtgcttatccaattacct-tattacataatctaa--cttgttgtcgtg-------gatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 1
----atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC---------------
     | |  |   | | |  ||||  || | |  |   | || ||  | |  |  || | | ||| |||    |||||  |  | ||  ||| ||  |   ||||||||                ||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| |||||||| ||||| ||||| ||                
catagtattttaattggggtttgcagctgatttgtcttttatacat--gatcatatgttgaccctgttgttttttttgttcttttattgttgtcatttgt--agGTAAGAT---------------ATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 2
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC---------
      | |||||   ||  || || | |     |  ||| | | | |  |  || |  ||  | | |  |       | ||||   ||| |   |     |  | | |  | |   | |  ||||| ||||| ||||| |||||||| || || ||||||   |||||||||||||||||||| ||||| ||||||||          
-----gttgattgttagt-tatctgctatt-ttacactatcttgtgcttatcctattacct--tattacataatctaacctgttgtcgtggttgactttaatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCA

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA16G17370.1 (Glycine max), 3'ss of exon 1
----atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC---------------
     | || |   | | |  || |  || | |  |   | |||||    || |  || | | ||| |||    |||||  |  | ||  ||| ||  |   ||||||| |               ||||| ||||| || || |||||||||||||| ||||||  ||| |||||||| |||||||| ||||| ||||| ||                
tatagtatgttaattggggtttgtagttgatttgtcttttttatatgatcttat--gtcgaccctgttgttttatttgttcttttattgctgtaatttgt--agGTAAGCA---------------ATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCCGAAAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC---------
 |||    |||||    ||| ||||||  |||     | |      || |       |  |  |      | |    | ||  | ||| ||||  |     |  | | |  | |   |    ||||| ||||| ||||| |||||||||||||| ||||||   |||||||||||||||||||| ||||| ||||||||          
-tgtttgtgattg-atctgc-tatggttacgctttcttgtgc----ttatccaattaccttattacataatcta-acttgttgtcgtg-gatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatc---gggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC-----------
      |   ||      |  |  ||| |   |  |  || ||   | | ||||   |||        |  | |||    | |||| ||  |||||      || |       |||  | |||||    ||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||           
-----ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtt-tcatcatttgatttaaagt-gtgtctgattgatgttttttggcagCT---TGAGTTGAAGAAA----TGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 1
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtag-tcgctgatgtgaggtttgtgttcgtgtttgtg-tgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC---------------
 | |  |    | |   |   | || |      |   ||| | | |  |  | ||  ||||  |  |   | | || ||  |||||||| ||      |||||||||                 ||||| ||||| ||||| ||| | || ||||| ||||||||||| || |||||||| |||||||| || ||||| |||               
-tcttttttcattcagatttttgtgtttcttttgagttattttgtgacggagctaaatcgcaaaatttgtgatggtattt-tgtttgtgctgccatttacagGTAAGCC---------------ATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAA

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 1
---atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------
    |  ||     |||    | |  | |  | |  ||  | |||| || | | |||    |   |    |   | | |||  || | ||||  ||| | |||||                 |  ||||||||||| |||||||| || |||||||| |||||||||||| |||||||||||||||| | ||| |||||||||            
gccctccgccttgatgcttcagtagtttgcatggt-gcattgtatcagggtttaggtctgtgggaaaaaaaacgtagggtttctgatggtgt--tgctcgcagGTCTAGC------------ACCATGGTGAAGCATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGC

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 1
-----------------------------------------------------------------------------------atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcaca-gGTAAGAAGGA---GAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------
                                                                                    ||||   ||| |   || || | | |||  || ||  |     ||   |         |||| | |  ||   || | ||   ||| |  |  |     ||| |  |  |     ||| || |  ||||||||||| ||||| || ||||| || || || ||||||||| ||||||| |||||||| | ||| |||||||||            
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaa-gttcttccccctaaacgggaggcgatctagttctcctgagg-ggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------------------atgtgctcgattgcgcgtgcatat---ggtctcgccgctgtatatcgggtt----gttggtagtcgctgatgtgaggtttgtgtt-cgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAA-ATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------
                                                          |||||  |   | | |   | |   |      | |||| |  || | ||    | ||   |   || | ||  | || || || | ||        |         || | ||    ||||  ||||  ||||||||||| ||||| || |||||||| || |||||||||||| |||||||||||||||| | ||| |||||||||            
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------------------atgtgctcgattgcgcgtgcatat---ggtctcgccgctgtatatcgggtt----gttggtagtcgctgatgtgaggtttgtgtt-cgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAA-ATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------------
                                                          |||||  |   | | |   | |   |      | |||| |  || | ||    | ||   |   || | ||  | || || || | ||        |         || | ||    ||||  ||||  ||||||||||| ||||| || |||||||| || |||||||||||| |||||||||||||||| | ||| |||||||||                  
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 1
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggttt--gtgttcgtgtttgtgtgatgc--gcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------
          ||| |   |  |   ||  ||  | |||        ||||      |  || || |  |||||  | |||  ||       ||||   |    |||          ||  |  |  ||||||||||| || || |||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||||||            
----------ttgtgatggagtggcgtgccgatgttgttc------ttgtctcgcattcctcatatagggtttaagggtttatgacataacgatgtcggagtcggtctattttcagGGTTGGCACCATGGTGAAGCATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGC

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC-------------
 |||| | || || ||||   | || | | |  | ||||  ||| |  |    || |    |  |    |||  |||     ||| ||||||| | |   || |  ||  ||       || ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||| | ||| ||||| |||             
-tgtgatggagtg-gcgtatttttg-tgttgttgttgtaattcgtgaagc-aataattagggtcggattgttgatgtcgcaatttttgtgatgtgtat--gtgaagAGTTGA-------AACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4878731|gb|AU063030.1|AU063030
EST:     CGCTCCGCCGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: CGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|218497465|gb|FG944659.1|FG944659
EST:     CGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: CGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|88675804|gb|CI729376.1|CI729376
EST:     CCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGNCGCGCAG                         GTAACAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTCATCCCCAA
genomic: CCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|38471417|gb|CF955548.1|CF955548
EST:     CGCTCTCCTCTTCGCTCCGCCGCGCAG                         GTCAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: CGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|218479989|gb|FG966405.1|FG966405
EST:     CGCTCCGCCGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: CGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|58675597|gb|CK064284.1|CK064284
EST:     GCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: GCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|88313010|gb|CI592294.1|CI592294
EST:     CCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCAGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: CCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|58684746|gb|CK073433.1|CK073433
EST:     TTCGCTCCGCCGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: TTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|58695028|gb|CK083715.1|CK083715
EST:     TCGCTCTCCTCTTCGCTCCGCCGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: TCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|218482999|gb|FG956127.1|FG956127
EST:     CCTCTTCGCTCCGCCGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: CCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
EST: gi|58586914|gb|CF985222.1|CF985222
EST:     TCGCTCATCCTCTTCGGTCGGCCGCGCAG                         GTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA
genomic: TCGCTC-TCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 88

CCCCTCTGCCACCGCTCGTCTTCCTCCCACCTTCCGCCGCCGCCGCCGTCGCTCTCCTCTTCGCTCCGCCGCGCAGgtacgccgcc ... atgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC
            cgctgat  putative branch site (score: 88)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- gtgctcg
- - - - - - - gcgtgca
- - - - - - - - - - - - - - - gccgctg
- - - - - - - - - - - - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt