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...tggatgaaaaacaactgtcaactgtaatacatatgattttatatcatttaaagggtacctactgactgaaatatcaaactgcgtgttttgttgtttacagAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAG
species | Oryza sativa |
transcript | LOC_Os03g36750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGTCGAG AGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGEST: gi|117242305|gb|CT842941.1|CT842941
genomic: ACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGgtccggttcc ... ttgtttacagAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAG
EST: ACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAG AGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGEST: gi|12405330|gb|AU166931.1|AU166931
genomic: ACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGgtccggttcc ... ttgtttacagAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAG
EST: ACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAG AGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGEST: gi|29657434|gb|CB653709.1|CB653709
genomic: ACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGgtccggttcc ... ttgtttacagAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAG
EST: ACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAG AGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAG
genomic: ACACGGAGAAGGACGGCCACCGCATTTCCTTCAACGAGACGTTTGCCGAGgtccggttcc ... ttgtttacagAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAG
atttaaagggtacctactgactgaaatatcaaactgcgtgttttgttgtttacagAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAG
tactgac putative branch site (score: 35)
ttttgtt putative PPT
aaatatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatgaaaaacaactgtcaactgtaatacatatgattttatatcatttaaagggtacctactgactgaaatatcaaactgcgtgttttgttgtttacagAGGGAATTAGGTGTGAGCTGGGATGTTGAGCTATATGGAGAATTGCTCAAGATAGGTGGCGGAAAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
tggatga
- - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcgtg