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...aatatatatattataagtttataaccatgttatatttgcatcattcatatttggctctttggattttcatttctaacttttctctacaactatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA
species | Oryza sativa |
transcript | LOC_Os03g31550.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88432584|gb|CI567623.1|CI567623
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTC-TGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88694482|gb|CI738520.1|CI738520
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88401614|gb|CI588555.1|CI588555
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: GTGCTCCCCGACGGCCTCGCTCACCTCACCCTGGCTC-AATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: GTGCTCCCCGACGGCCTCGCTCACCTCACCCTG-CTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
catatttggctctttggattttcatttctaacttttctctacaactatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA
ttctaac putative branch site (score: 17)
tacaactatattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatatatattataagtttataaccatgttatatttgcatcattcatatttggctctttggattttcatttctaacttttctctacaactatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - tgcatca