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...aatatatatattataagtttataaccatgttatatttgcatcattcatatttggctctttggattttcatttctaacttttctctacaactatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA
species | Oryza sativa |
transcript | LOC_Os03g31550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88366478|gb|CI610623.1|CI610623
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAAGAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88364694|gb|CI612509.1|CI612509
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTTGGTCTTCCTGGAACAAATCTTGGATGTGGTGAAGGTGGCTGTGGAEST: gi|88404507|gb|CI580943.1|CI580943
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATT-GGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGA
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88299845|gb|CI577347.1|CI577347
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88385624|gb|CI566486.1|CI566486
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATAC-TCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGATGTGGAGEST: gi|88367173|gb|CI563937.1|CI563937
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGGACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88314018|gb|CI600020.1|CI600020
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88368103|gb|CI574985.1|CI574985
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88728262|gb|CI751772.1|CI751772
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88421291|gb|CI569136.1|CI569136
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGTCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88410918|gb|CI578724.1|CI578724
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88430101|gb|CI565114.1|CI565114
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88692572|gb|CI736147.1|CI736147
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGANGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88694482|gb|CI738520.1|CI738520
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88353883|gb|CI634674.1|CI634674
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88423734|gb|CI617086.1|CI617086
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88395413|gb|CI611330.1|CI611330
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88350340|gb|CI623278.1|CI623278
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88398129|gb|CI585632.1|CI585632
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88411227|gb|CI564348.1|CI564348
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCACAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGEST: gi|88391562|gb|CI600751.1|CI600751
genomic: CGTGCTCCCCGACGGCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
EST: GTGCTCCCCGACGGCCCTCGCTCACCTCACCCTGCTCCAATACCTCAGAG ACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
genomic: GTGCTCCCCGACGGCC-TCGCTCACCTCACCCTGCTCCAATACCTCAGAGgtccctctct ... tatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAG
catatttggctctttggattttcatttctaacttttctctacaactatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA
ttctaac putative branch site (score: 1)
tacaactatattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatatatattataagtttataaccatgttatatttgcatcattcatatttggctctttggattttcatttctaacttttctctacaactatattatagACATTGGTCTTCCTGGAACAAAGCTTGGATGTGGTGAAGGTGGCTGTGGAGCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG