Sequence
atgc intronic sequence ATGC exonic sequencegtatccttctttaaatgcctttatggtttgttttagttgtcttcttttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g24220.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 2
--gta-tccttctttaaatgcctttatggtttgttttagttgtcttcttttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACG--------------------------------------
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atgtaattgatattcaaatataagcattatt-gttctagttatattattata---agttggatata-------ttatctacttgaggagttttagacttagctttt-tgtagAGGCACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGATCTGAATATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAG
upper sequence: LOC_Os03g24220.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 1
gtatccttctttaaatgcctttatggttt--gttttagttgtcttcttttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACG--------------------------------------
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--------atgtaattgatattcaaatttaagaattattgttctagttatattattataagttgaata--tattatctacttgaggagttttagacttaactttt-tgtagAGGGACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGACCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAG
upper sequence: LOC_Os03g24220.3 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 1
gtatccttctttaaatgcctttatggtttgttttagttgtcttcttttagaaatctacg--tacaagagtttctatcctt--ttatgctgttagccccttaattaaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACG--------------------------------------
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-----------tgcatgcatgtgtt-cctgttattgttctagatattgaacaagctgctattgtcttaattgctatttttgcttctggaattgtgaacttaac-atcttgtagTGGCACCGAAATATGGAGAATTGAGAACTTTCAGCCAGTTCCTTTGCCAAAGTCCGATTATGGTAAATTCTACACAGGGGACTCTTACATTGTCCTGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29674447|gb|CB670722.1|CB670722EST: TTGATCCTGCATTTCAAGGAGTTGGCCAAAAACC TGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAA
genomic: TTGATCCTGCATTTCAAGGAGTTGGCCAAAAACCgtatccttct ... taaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACG
ccccttaat putative branch site
ttaattaaaatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatccttctttaaatgcctttatggtttgttttagttgtcttcttttagaaatctacgtacaagagtttctatccttttatgctgttagccccttaattaaaatatagTGGCACAGAAATATGGAGGATTCAAGATTTTAAGCCAGTTCCTTTGCCAAAAGCAGATTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT