1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaccctcctgaatccatccttgtcagttgtctgtatgttcggttcttgtttcttggctctttcttgattatccttcgttttgttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCGGAGAAGGTGCTTGCGGCGGCCGCGGAGGTCGGCGTCCGCATCGACTGC
species | Oryza sativa |
transcript | LOC_Os03g21460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|33687222|gb|CF315461.1|CF315461
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|33687113|gb|CF315352.1|CF315352
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|58601647|gb|CK012175.1|CK012175
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: AGATCATCCCGGTCGCTTG-CTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|88308036|gb|CI647863.1|CI647863
genomic: AGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|33808256|gb|CF330017.1|CF330017
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|33654738|gb|CF277352.1|CF277352
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|58593206|gb|CF991514.1|CF991514
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: TAGATGAAGATCATCCCGGTCGCTTGGCGGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|218495156|gb|FG966275.1|FG966275
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|88396730|gb|CI620063.1|CI620063
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|66913473|gb|CX100321.1|CX100321
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: AGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAAGCTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCEST: gi|33659109|gb|CF281722.1|CF281722
genomic: AGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAA-CTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCTGTGGAGCCEST: gi|33661942|gb|CF292909.1|CF292909
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
EST: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACGACTATGCCTACCT AATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
genomic: CAGATGAAGATCATCCCGGTCGCTTGCCTGGAGGACAACTATGCCTACCTgtaccctcct ... gttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCC
gttcggttcttgtttcttggctctttcttgattatccttcgttttgttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCGGAGAAGGTGCTTGCGGCGGCCGCGGAGGTCGGCGTCCGCATCGACTGC
tcttgat putative branch site (score: 30)
tccttcgttttgttct putative PPT
ttgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccctcctgaatccatccttgtcagttgtctgtatgttcggttcttgtttcttggctctttcttgattatccttcgttttgttcttgaagAATCGTGGACGAGAGCACCAAGTCGGCGGCGGCCGTCGACCCCGTGGAGCCGGAGAAGGTGCTTGCGGCGGCCGCGGAGGTCGGCGTCCGCATCGACTGC
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