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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccgaccgccttttacaacctccatattccaagctcgaagctttcaaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG

Basic information

species Oryza sativa
transcript LOC_Os03g21140.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G003424_T03 (Zea mays), 3'ss of exon 1
gtaccgaccgccttttacaacctccatattccaagctcgaagctttcaaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG----------------------------------------------------------
                                    ||| |     ||||| |||| |||||    || |  || ||| |||||||||||||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| | |||||| || |||||||||                                                          
-----------------------------------ttcgca----ccaaagctccagccttt----ttcgcctgtgcgcgtgcagagccgcggcggccgcgtctctgatgctgggcggcggcgacgaggcgcacaagttcatgGCCCGGCCGCGCCTGGACCGTGCCGACTTCGCTAGCATGATGAACCCCGGCTCGCGCCAGATTTATCTGACCTTCCCGGCCGACAGCACGTTCCGCGAGG

upper sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G086614_T01 (Zea mays), 3'ss of exon 1
gtaccga--ccgccttttacaacctccatattccaagctcgaagctttc-----aaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG
|||  ||  |||||||| ||||  ||  |   |||| |||||| | |||     |||| |||| |||||    || |  ||  || |||||||||||||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||| |  ||||| || | |||||||
gtagagaagccgccttt-acaagttctttcccccaaactcgaatcattcgcaccaaagctccagccttt----ttcgcctgttcgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGGCCGGCCGCGCCTGGACCGTGCTGACTTCGCGAACATGATG

upper sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G003424_T01 (Zea mays), 3'ss of exon 1
gtaccgaccgccttttacaacctccatattccaagctcgaagctttcaaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG-------------------------------------------------------------------------
                                                      || |||||    || |  || ||| |||||||||||||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| | |||||| || |||||||||                                                                         
------------------------------------------------------cagccttt----ttcgcctgtgcgcgtgcagagccgcggcggccgcgtctctgatgctgggcggcggcgacgaggcgcacaagttcatggcccggccgcgcctgGACCGTGCCGACTTCGCTAGCATGATGAACCCCGGCTCGCGCCAGATTTATCTGACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACT

upper sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G819035_T01 (Zea mays), 3'ss of exon 2
--gtaccgaccgccttttacaacctccatattccaagctcgaagctttc-----aaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG
    | |  | |||||| ||||  ||    | | || |||||| | |||     |||| |||| |||||    || |  || | | |||||||||||||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| | |||||| |||||| |||||
gtagagcagctgccttt-acaagttctgactccgaaactcgaatcattcgcaccaaagctccagccttt----ttcgcctgtgtgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGCCCGGCCGCGCCTGGACCGTGCCGACTTCGCCAGCCTGATG

upper sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G003424_T02 (Zea mays), 3'ss of exon 1
--gtaccgaccgccttttacaacctccatattccaagctcgaagctttc-----aaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG
    | |  |||||||| ||||  ||      | || |||||| | |||     |||| |||| |||||    || |  || ||| |||||||||||||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| | |||||| || |||||||||
gtagagcagccgccttt-acaagttctgaccccgaaactcgaatcgttcgcaccaaagctccagccttt----ttcgcctgtgcgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGCCCGGCCGCGCCTGGACCGTGCCGACTTCGCTAGCATGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaagctcgaagctttcaaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG
             tttcaaa  TA-rich tract