Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatactgtttttaaggaaggtgctgtttggcatgctgcttgattttaattatttgatgaaccctggctgaatactatcatttgtttgattctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA

Basic information

species Oryza sativa
transcript LOC_Os03g20310.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88425762|gb|CI569349.1|CI569349
EST:     AGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCCCCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88407487|gb|CI586328.1|CI586328
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|218492876|gb|FG956101.1|FG956101
EST:     CCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88383961|gb|CI631851.1|CI631851
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88352990|gb|CI630168.1|CI630168
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTACCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88345102|gb|CI628356.1|CI628356
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88332679|gb|CI660197.1|CI660197
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|66916817|gb|CX103665.1|CX103665
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88305366|gb|CI630528.1|CI630528
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88345518|gb|CI629779.1|CI629779
EST:     CGGGGGCTCTCCCCTCGCTCCCCATGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGACGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|29658760|gb|CB655035.1|CB655035
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|58591209|gb|CF989517.1|CF989517
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTAGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88449999|gb|CI572130.1|CI572130
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88432234|gb|CI565267.1|CI565267
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGTTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|29658674|gb|CB654949.1|CB654949
EST:     CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
EST: gi|88299315|gb|CI572267.1|CI572267
EST:     NNNNNNCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCG                         ATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
genomic: CGGGGGCTCTCCCCTCGCTCCCCACGGCGGTTGGCACCTGCTGGCTCTCGgtaagaccta ... tctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattatttgatgaaccctggctgaatactatcatttgtttgattctttcgcagATCCAACGTGTACAGCTAATTTGATCTGTTGGCGCCTTAGCTAGAA
                                            ttctttcgc  CT-rich tract
     tatttgat  TA-rich tract